Fast and robust orientation of cryo-electron microscopy images

DOI10.1515/MLBMB-2015-0010MaRDI QIDQ326622zbMATH OpenOpenAlexWikidataFDO

Authors Guo-Liang Xu, Xia Wang, Ming Li, Zhucui Jing

Publication date 12 October 2016

Published in Molecular Based Mathematical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivs 3.0 Unported

Full work available at URL https://doi.org/10.1515/mlbmb-2015-0010

zbMATH Keywords

orientationcommon linecryo-EM imagessingle-particle reconstruction

Mathematics Subject Classification ID

Biomedical imaging and signal processing (92C55) Radon transform (44A12)

Recommendations

• Three-dimensional structure determination from common lines in cryo-EM by eigenvectors and semidefinite programming
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• An algorithm for recovering unknown projection orientations and shifts in 3-D tomography

Cites work

• scientific article; zbMATH DE number 981250 (Why is no real title available?)
• scientific article; zbMATH DE number 961607 (Why is no real title available?)
• A fast classification method for single-particle projections with a translation and rotation invariant
• Gradient-flow-based semi-implicit finite-element method and its convergence analysis for image reconstruction
• Inversion of electron tomography images using \(L^2\)-gradient flows -- computational methods
• Mathematical methods in image reconstruction
• Orientation determination of cryo-EM images using least unsquared deviations
• Reference free structure determination through eigenvectors of center of mass operators
• The mathematics of computerized tomography
• Three-dimensional structure determination from common lines in cryo-EM by eigenvectors and semidefinite programming
• Viewing direction estimation in cryo-EM using synchronization

Cited in

(14)

• A wavelet based alternative iteration method for the orientation refinement of cryo-electron microscopy 3D reconstruction
• A fast classification method for single-particle projections with a translation and rotation invariant
• Orientation determination of cryo-EM images using least unsquared deviations
• scientific article; zbMATH DE number 2040769 (Why is no real title available?)
• Orientation estimation of cryo-EM images using projected gradient descent method
• Computational Science - ICCS 2004
• Regularizing Orientation Estimation in Cryogenic Electron Microscopy Three-Dimensional Map Refinement through Measure-Based Lifting over Riemannian Manifolds
• A derivative-based fast autofocus method in electron microscopy
• Three-dimensional structure determination from common lines in cryo-EM by eigenvectors and semidefinite programming
• A common lines approach for \textit{ab initio} modeling of cyclically symmetric molecules
• Common lines ab initio reconstruction of \(D_2\)-symmetric molecules in cryo-electron microscopy
• Viewing angle classification of cryo-electron microscopy images using eigenvectors
• Viewing direction estimation in cryo-EM using synchronization
• Structural variability from noisy tomographic projections

Describes a project that uses

Uses Software

• RELION

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