Structural Variability from Noisy Tomographic Projections

DOI10.1137/17M1153509zbMath1401.92117arXiv1710.09791WikidataQ90571551 ScholiaQ90571551MaRDI QIDQ4689767

Amit Singer, Joakim Andén

Publication date: 17 October 2018

Published in: SIAM Journal on Imaging Sciences (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/1710.09791

zbMATH Keywords

principal component analysisheterogeneitydeconvolutionToeplitz matricesshift invarianceconjugate gradientsingle-particle reconstructioncryo-electron microscopy

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Nonparametric estimation (62G05) Computing methodologies for image processing (68U10) Biomedical imaging and signal processing (92C55) Radon transform (44A12) Numerical methods for inverse problems for integral equations (65R32)

Related Items (8)

On the choice of high-dimensional regression parameters in Gaussian random tomography ⋮ Multitaper Estimation on Arbitrary Domains ⋮ Matrix Denoising for Weighted Loss Functions and Heterogeneous Signals ⋮ Cryo-EM reconstruction of continuous heterogeneity by Laplacian spectral volumes ⋮ A max-cut approach to heterogeneity in cryo-electron microscopy ⋮ Method of moments for 3D single particleab initiomodeling with non-uniform distribution of viewing angles ⋮ Hyper-molecules: on the representation and recovery of dynamical structures for applications in flexible macro-molecules in cryo-EM ⋮ Spectral decomposition of atomic structures in heterogeneous cryo-EM

Uses Software

• FREALIGN
• RELION
• mftoolbox
• cryoSPARC

Cites Work

• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Unnamed Item
• Fast algorithms for spherical harmonic expansions. III
• Fast spherical Fourier algorithms.
• On the distribution of the largest eigenvalue in principal components analysis
• Optimal shrinkage of eigenvalues in the spiked covariance model
• Diffusion maps
• The Mathematics of Computerized Tomography
• Fundamentals of Computerized Tomography
• Orientation Determination of Cryo-EM Images Using Least Unsquared Deviations
• Rapid Solution of the Cryo-EM Reconstruction Problem by Frequency Marching
• A Proposal for Toeplitz Matrix Calculations
• An Optimal Circulant Preconditioner for Toeplitz Systems
• Analysis of Some Krylov Subspace Approximations to the Matrix Exponential Operator
• Optimal and Superoptimal Circulant Preconditioners
• Fast Fourier Transforms for Nonequispaced Data
• Accelerating the Nonuniform Fast Fourier Transform
• Conjugate Gradient Methods for Toeplitz Systems
• Least squares quantization in PCM
• Iterative Solution Methods
• Viewing Direction Estimation in Cryo-EM Using Synchronization
• Covariance Matrix Estimation for the Cryo-EM Heterogeneity Problem
• Optimal Shrinkage of Singular Values
• An Algorithm for the Machine Calculation of Complex Fourier Series
• Toeplitz-based iterative image reconstruction for MRI with correction for magnetic field inhomogeneity
• Functions of Matrices
• Low-rank matrix completion using alternating minimization
• DISTRIBUTION OF EIGENVALUES FOR SOME SETS OF RANDOM MATRICES
• Prolate Spheroidal Wave Functions, Fourier Analysis and Uncertainty - IV: Extensions to Many Dimensions; Generalized Prolate Spheroidal Functions
• The Rotation of Eigenvectors by a Perturbation. III
• Two polynomial methods of calculating functions of symmetric matrices
• Methods of conjugate gradients for solving linear systems

This page was built for publication: Structural Variability from Noisy Tomographic Projections