Spectral decomposition of atomic structures in heterogeneous cryo-EM

DOI10.1088/1361-6420/ACB2BAOpenAlexW4315853020MaRDI QIDQ5876570FDOQ5876570

Authors: Carlos Esteve-Yagüe, Willem Diepeveen, Ozan Öktem, Carola-Bibiane Schönlieb 

Publication date: 1 February 2023

Published in: Inverse Problems (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2209.05546

Recommendations

• Hyper-molecules: on the representation and recovery of dynamical structures for applications in flexible macro-molecules in cryo-EM
• Cryo-EM reconstruction of continuous heterogeneity by Laplacian spectral volumes
• Covariance matrix estimation for the cryo-EM heterogeneity problem
• Viewing angle classification of cryo-electron microscopy images using eigenvectors
• Three-dimensional structure determination from common lines in cryo-EM by eigenvectors and semidefinite programming

zbMATH Keywords

graph Laplaciantomographic reconstructionatomic structure decompositionheterogeneous cryo-EM

Mathematics Subject Classification ID

Bayesian inference (62F15) Biochemistry, molecular biology (92C40) Nonconvex programming, global optimization (90C26) Biomedical imaging and signal processing (92C55) Electro- and magnetostatics (78A30) Biological applications of optics and electromagnetic theory (78A70) Inverse problems (including inverse scattering) in optics and electromagnetic theory (78A46) Atomic physics (81V45) Geometric optics (78A05)

Cites Work

• Finding structure with randomness: probabilistic algorithms for constructing approximate matrix decompositions
• Consistency of spectral clustering
• Geometrical structure of Laplacian eigenfunctions
• Le spectre d'une variété riemannienne. (The spectrum of a Riemannian manifold)
• On learning with integral operators
• Cryo-EM reconstruction of continuous heterogeneity by Laplacian spectral volumes
• Uniqueness of tomography with unknown view angles
• Feasibility of tomography with unknown view angles
• A spectral series approach to high-dimensional nonparametric regression
• Covariance matrix estimation for the cryo-EM heterogeneity problem
• Structural variability from noisy tomographic projections
• Rapid solution of the cryo-EM reconstruction problem by frequency marching

Cited In (3)

• Covariance matrix estimation for the cryo-EM heterogeneity problem
• Hyper-molecules: on the representation and recovery of dynamical structures for applications in flexible macro-molecules in cryo-EM
• Cryo-EM reconstruction of continuous heterogeneity by Laplacian spectral volumes

Uses Software

• RELION

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