Model Reduction of Biochemical Reactions Networks by Tropical Analysis Methods
From MaRDI portal
Publication:3450708
DOI10.1051/mmnp/201510310zbMath1369.92047arXiv1503.01414OpenAlexW2963202900MaRDI QIDQ3450708
No author found.
Publication date: 6 November 2015
Published in: Mathematical Modelling of Natural Phenomena (Search for Journal in Brave)
Full work available at URL: https://arxiv.org/abs/1503.01414
Kinetics in biochemical problems (pharmacokinetics, enzyme kinetics, etc.) (92C45) Biochemistry, molecular biology (92C40)
Related Items (12)
Coordinate-independent singular perturbation reduction for systems with three time scales ⋮ Model reduction of dominant feedback systems ⋮ Methods of model reduction for large-scale biological systems: a survey of current methods and trends ⋮ Classical quasi-steady state reduction -- a mathematical characterization ⋮ A skin microbiome model with AMP interactions and analysis of quasi-stability vs stability in population dynamics ⋮ Reduction of Chemical Reaction Networks with Approximate Conservation Laws ⋮ Tropical abstraction of biochemical reaction networks with guarantees ⋮ Balanced truncation for model reduction of biological oscillators ⋮ Singular perturbations and scaling ⋮ A geometric method for model reduction of biochemical networks with polynomial rate functions ⋮ Algorithmic reduction of biological networks with multiple time scales ⋮ Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations
Cites Work
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Unnamed Item
- Chemical reaction systems with toric steady states
- Recasting nonlinear differential equations as S-systems: a canonical nonlinear form
- Invariant manifolds for physical and chemical kinetics
- A graph-theoretical approach for the analysis and model reduction of complex-balanced chemical reaction networks
- Computing tropical varieties
- Complexity of Solving Systems with Few Independent Monomials and Applications to Mass-Action Kinetics
- Tropicalization and tropical equilibration of chemical reactions
- Non-archimedean amoebas and tropical varieties
- The tropical Grassmannian
- Tropical Geometries and Dynamics of Biochemical Networks Application to Hybrid Cell Cycle Models
This page was built for publication: Model Reduction of Biochemical Reactions Networks by Tropical Analysis Methods