DNA codeword design: theory and applications

DOI10.1142/S0129626414400015MaRDI QIDQ3458191zbMATH OpenOpenAlexFDO

Authors Max H. Garzon

Publication date 18 December 2015

Published in Parallel Processing Letters (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1142/s0129626414400015

zbMATH Keywords

DNA chip/microarray designDNA memoriesDNA spaceGibbs energynoncrosshybridizing oligonucleotide basesphylogenetic analysisspherical codes

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cites work

• Characterization of non-crosshybridizing DNA oligonucleotides manufactured in vitro
• Codeword design and information encoding in DNA ensembles
• DNA sequence design using templates
• On codeword design in metric DNA spaces

Cited in

(14)

• Exordium for DNA codes
• Geometric orthogonal codes and geometrical difference packings
• Reversible Codes and Applications to DNA
• Designing q-unique DNA sequences with integer linear programs and Euler tours in de Bruijn graphs
• Randomized fast design of short DNA words
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• A Geometric Approach to Gibbs Energy Landscapes and Optimal DNA Codeword Design
• Dipole codes attractively encode glue functions
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• DNA Computing
• Aspects of Molecular Computing
• Codeword design and information encoding in DNA ensembles
• On codeword design in metric DNA spaces

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