DNA codeword design: theory and applications

DOI10.1142/S0129626414400015zbMATH Open1327.92039OpenAlexW1985041785MaRDI QIDQ3458191FDOQ3458191

Authors: Max H. Garzon 

Publication date: 18 December 2015

Published in: Parallel Processing Letters (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1142/s0129626414400015

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zbMATH Keywords

spherical codesGibbs energyphylogenetic analysisDNA chip/microarray designDNA memoriesDNA spacenoncrosshybridizing oligonucleotide bases

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

Cites Work

• DNA sequence design using templates
• On codeword design in metric DNA spaces
• Codeword design and information encoding in DNA ensembles
• Characterization of non-crosshybridizing DNA oligonucleotides manufactured in vitro

Cited In (14)

• DNA Computing
• On codeword design in metric DNA spaces
• Codeword design and information encoding in DNA ensembles
• Designing q-unique DNA sequences with integer linear programs and Euler tours in de Bruijn graphs
• Title not available (Why is that?)
• Geometric orthogonal codes and geometrical difference packings
• Randomized fast design of short DNA words
• Title not available (Why is that?)
• Theory and applications of DNA codeword design
• Reversible Codes and Applications to DNA
• Aspects of Molecular Computing
• Exordium for DNA codes
• A Geometric Approach to Gibbs Energy Landscapes and Optimal DNA Codeword Design
• Dipole codes attractively encode glue functions

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