DNA codeword design: theory and applications

DOI10.1142/S0129626414400015MaRDI QIDQ3458191zbMATH OpenOpenAlexFDO

Authors Max H. Garzon

Publication date 18 December 2015

Published in Parallel Processing Letters (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1142/s0129626414400015

zbMATH Keywords

spherical codesGibbs energyphylogenetic analysisDNA chip/microarray designDNA memoriesDNA spacenoncrosshybridizing oligonucleotide bases

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20)

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Cites work

• Characterization of non-crosshybridizing DNA oligonucleotides manufactured in vitro
• Codeword design and information encoding in DNA ensembles
• DNA sequence design using templates
• On codeword design in metric DNA spaces

Cited in

(14)

• DNA Computing
• On codeword design in metric DNA spaces
• Codeword design and information encoding in DNA ensembles
• Designing q-unique DNA sequences with integer linear programs and Euler tours in de Bruijn graphs
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• Geometric orthogonal codes and geometrical difference packings
• Randomized fast design of short DNA words
• scientific article; zbMATH DE number 6262531 (Why is no real title available?)
• Theory and applications of DNA codeword design
• Reversible Codes and Applications to DNA
• Exordium for DNA codes
• Aspects of Molecular Computing
• A Geometric Approach to Gibbs Energy Landscapes and Optimal DNA Codeword Design
• Dipole codes attractively encode glue functions

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