On codeword design in metric DNA spaces

DOI10.1007/S11047-008-9088-6MaRDI QIDQ734201zbMATH OpenOpenAlexFDO

Authors Vinhthuy Phan, Max H. Garzon

Publication date 19 October 2009

Published in Natural Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11047-008-9088-6

zbMATH Keywords

DNA hybridizationGibbs energyCodeword design\(h\)-DistanceData coding in DNAMaximal codesMetric DNA space

Mathematics Subject Classification ID

Modes of computation (nondeterministic, parallel, interactive, probabilistic, etc.) (68Q10) Theory of data (68P99)

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Cites work

• scientific article; zbMATH DE number 3639144 (Why is no real title available?)
• scientific article; zbMATH DE number 1342094 (Why is no real title available?)
• scientific article; zbMATH DE number 1953223 (Why is no real title available?)
• scientific article; zbMATH DE number 2087012 (Why is no real title available?)
• scientific article; zbMATH DE number 1568800 (Why is no real title available?)
• Aspects of Molecular Computing
• Bounds for DNA codes with constant GC-content
• Characterization of non-crosshybridizing DNA oligonucleotides manufactured in vitro
• Codeword design and information encoding in DNA ensembles
• DNA Computing
• DNA Computing
• DNA Computing
• DNA sequence design using templates
• In Search of Optimal Codes for DNA Computing
• Introduction to algorithms
• Strand design for biomolecular computation.
• The probabilistic method. With an appendix on the life and work of Paul Erdős.

Cited in

(12)

• Deterministic polynomial-time algorithms for designing short DNA words
• Deterministic polynomial-time algorithms for designing short DNA words
• DNA Computing
• DNA codeword design: theory and applications
• A content-addressable DNA database with learned sequence encodings
• In Search of Optimal Codes for DNA Computing
• Theory and applications of DNA codeword design
• Linear and nonlinear constructions of DNA codes with Hamming distance \(d\) and constant \(GC\)-content
• A Geometric Approach to Gibbs Energy Landscapes and Optimal DNA Codeword Design
• Coding and Cryptography
• Strand design for biomolecular computation.
• DNA Sticky End Design and Assignment for Robust Algorithmic Self-assembly

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