Fast vectorized distance matrix computation for multiple sequence alignment on multi-cores

DOI10.1142/S1793524515500849MaRDI QIDQ3459331zbMATH OpenFDO

Authors Mohammed W. al-Neama, Naglaa M. Reda, Fayed F. M. Ghaleb

Publication date 22 December 2015

Published in International Journal of Biomathematics (Search for Journal in Brave)

zbMATH Keywords

distance matrixbioinformaticsparallel programmingmultiple sequence alignmentmulti-cores

Mathematics Subject Classification ID

Protein sequences, DNA sequences (92D20) Parallel algorithms in computer science (68W10) Computational methods for problems pertaining to biology (92-08)

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(2)

• Calculating Genomic Distances in Parallel Using OpenMP
• Accurate and efficient methods to improve multiple circular sequence alignment

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