Hybrid continuum-particle method for fluctuating lipid bilayer membranes with diffusing protein inclusions

DOI10.1016/J.JCP.2013.06.016zbMATH Open1349.92057OpenAlexW2024259604MaRDI QIDQ348012FDOQ348012

Frank L. H. Brown, Paul J. Atzberger, Jon Karl Sigurdsson

Publication date: 5 December 2016

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jcp.2013.06.016

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zbMATH Keywords

statistical mechanicscomputational fluid dynamicsbiophysicslipid bilayer membranesmembrane proteinsstochastic numerical methods

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08) Cell biology (92C37)

Cites Work

• An Algorithm for the Machine Calculation of Complex Fourier Series
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• The immersed boundary method
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• A stochastic immersed boundary method for fluid-structure dynamics at microscopic length scales

Cited In (9)

• The resistivity and mobility functions for a model system of two equal-sized proteins in a lipid bilayer
• The Lipid Bilayer at the Mesoscale: A Physical Continuum Model
• Modelling and simulations of multi-component lipid membranes and open membranes via diffuse interface approaches
• Arbitrary Lagrangian-Eulerian finite element method for curved and deforming surfaces. I: General theory and application to fluid interfaces
• The effect of hydrodynamic interactions on the tracer and gradient diffusion of integral membrane proteins in lipid bilayers
• A computational model of protein induced membrane morphology with geodesic curvature driven protein-membrane interface
• Efficient simulation of thermally fluctuating biopolymers immersed in fluids on 1-micron, 1-second scales
• The combined hydrodynamic and thermodynamic effects of immobilized proteins on the diffusion of mobile transmembrane proteins
• On Curvature Driven Rotational Diffusion of Proteins on Membrane Surfaces

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