Cross-study validation and combined analysis of gene expression microarray data

DOI10.1093/BIOSTATISTICS/KXM033MaRDI QIDQ3526161zbMATH OpenOpenAlexWikidataFDO

Authors Elizabeth Garrett-Mayer, Xiaogang Zhong, Edward Gabrielson, Giovanni Parmigiani, Leslie Cope

Publication date 25 September 2008

Published in Biostatistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1093/biostatistics/kxm033

zbMATH Keywords

meta-analysisbreast cancerreliabilityintraclass correlationprinicipal components

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Medical applications (general) (92C50)

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(17)

• Integrative correlation: properties and relation to canonical correlations
• A strategy for identifying putative causes of gene expression variation in human cancers
• Deriving chemosensitivity from cell lines: forensic bioinformatics and reproducible research in high-throughput biology
• An empirical Bayes' approach to joint analysis of multiple microarray gene expression studies
• Application of skew-normal distribution for detecting differential expression to microRNA data
• An improved method on Wilcoxon rank sum test for gene selection from microarray experiments
• Meta-analysis of microarray data: the case of imatinib resistance in chronic myelogenous leukemia
• Bayesian nonparametric cross-study validation of prediction methods
• On integrating multi-experiment microarray data
• Concerns About Unreliable Data from Spotted cDNA Microarrays Due to Cross-Hybridization and Sequence Errors
• Combining Results of Microarray Experiments: A Rank Aggregation Approach
• Comparability of gene expression in human blood, immune and carcinoma cells
• Combined amplification and molecular classification for gene expression diagnostics
• MergeMaid: R Tools for Merging and Cross-Study Validation of Gene Expression Data
• Omnibus testing and gene filtration in microarray data analysis
• Statistical tests for the intersection of independent lists of genes: sensitivity, FDR, and type I error control
• Effectiveness of combinations of Gaussian graphical models for model building

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