The first and second variation of the total energy of closed duplex DNA in planar case

DOI10.1142/S0217979210054257zbMATH Open1185.92008arXiv0811.2564OpenAlexW2010470338MaRDI QIDQ3556879FDOQ3556879

Authors: Xiao-Hua Zhou 

Publication date: 26 April 2010

Published in: International Journal of Modern Physics B (Search for Journal in Brave)

Abstract: DNA's shape mostly lies on its total energy $F$. Its corresponding equilibrium shape equations can be got by classical variation method: letting the first energy variation $delt{a}^{(1)}F=0$. Here we not only provide the first variation $delt{a}^{(1)}F$ but also give the second variation $delt{a}^{(2)}F$ in planar case. Moreover, the general shape equations of DNA are obtained and a mistake in [Zhang, emph{et al}. {it Phys. Rev. E} {�f 70} 051902 (2004)] is pointed out.

Full work available at URL: https://arxiv.org/abs/0811.2564

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zbMATH Keywords

DNAtensioncurvature

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Biophysics (92C05)

Cites Work

• A geometric theory on the elasticity of bio-membranes
• Elastic model of looped DNA
• Three-dimensional shapes of looped DNA

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