PLASQ: a generalized linear model-based procedure to determine allelic dosage in cancer cells from SNP array data

DOI10.1093/BIOSTATISTICS/KXL012zbMath1144.62098OpenAlexW2141269258WikidataQ31045449 ScholiaQ31045449MaRDI QIDQ3592113

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Publication date: 12 September 2007

Published in: Biostatistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1093/biostatistics/kxl012

zbMATH Keywords

expectation-maximization algorithmgeneralized linear modelcancer genomicsDNA copy numberallelic imbalancesingle nucleotide polymorphism array

Mathematics Subject Classification ID

Classification and discrimination; cluster analysis (statistical aspects) (62H30) Applications of statistics to biology and medical sciences; meta analysis (62P10) Generalized linear models (logistic models) (62J12) Medical applications (general) (92C50)

Related Items (5)

A study of biases of DNA copy number estimation based on PICR model ⋮ PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data ⋮ A multilevel model to address batch effects in copy number estimation using SNP arrays ⋮ Hidden Markov models for the assessment of chromosomal alterations using high-throughput SNP arrays ⋮ PLASQ

Uses Software

• R
• dChipSNP

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