A study of biases of DNA copy number estimation based on PICR model

DOI10.1007/S11464-011-0125-XMaRDI QIDQ1946958zbMATH OpenOpenAlexFDO

Authors Quan Wang, Jianghan Qu, Xiaoxing Cheng, Yongjian Kang, Lin Wan, Minghua Deng, Minping Qian

Publication date 10 April 2013

Published in Frontiers of Mathematics in China (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s11464-011-0125-x

zbMATH Keywords

copy number variation (CNV)cross-hybridizationsingle-nucleotide polymorphism (SNP) array

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) General topics in computing methodologies (68U01) Protein sequences, DNA sequences (92D20)

Recommendations

• The biases of copy numbers from affymetrix SNP arrays and their corrections
• A multilevel model to address batch effects in copy number estimation using SNP arrays
• Segmentation and estimation for SNP microarrays: A Bayesian multiple change-point approach
• Genotype copy number variations using Gaussian mixture models: theory and algorithms
• PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data

Cites work

• Circular binary segmentation for the analysis of array-based DNA copy number data
• PLASQ: a generalized linear model-based procedure to determine allelic dosage in cancer cells from SNP array data
• The biases of copy numbers from affymetrix SNP arrays and their corrections

Cited in

(2)

• A multilevel model to address batch effects in copy number estimation using SNP arrays
• The biases of copy numbers from affymetrix SNP arrays and their corrections

Describes a project that uses

Uses Software

• PLASQ
• PICNIC
• CARAT

This page was built for publication: A study of biases of DNA copy number estimation based on PICR model

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q1946958)