Long-Time Simulations on High Resolution Meshes to Model Calcium Waves in a Heart Cell

DOI10.1137/070692261MaRDI QIDQ3648596zbMATH OpenOpenAlexFDO

Authors Matthias K. Gobbert

Publication date 27 November 2009

Published in SIAM Journal on Scientific Computing (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1137/070692261

zbMATH Keywords

cluster computingfinite element methodmatrix-free implementationnonsmooth data

Mathematics Subject Classification ID

Reaction-diffusion equations (35K57) Finite element, Rayleigh-Ritz and Galerkin methods for initial value and initial-boundary value problems involving PDEs (65M60) Parallel numerical computation (65Y05) Physiology (general) (92C30) Cell biology (92C37)

Recommendations

• Multiscale modeling and numerical simulation of calcium cycling in cardiac myocytes
• A localized meshless approach for modeling spatial-temporal calcium dynamics in ventricular myocytes
• A 3D reaction-diffusion system describing calcium dynamics in cardiac cell
• Simulation of the auto-oscillatory calcium dynamics in cardiomyocytes in terms of electron conformational theory
• Mathematical modelling and numerical simulation of calcium oscillations in a cardiac mitochondria
• Computational modelling of the initiation and development of spontaneous intracellular \(Ca^{2+}\) waves in ventricular myocytes
• Computational biology of propagation in excitable media models of cardiac tissue
• Intracellular Ca\(^{2+}\) nonlinear wave behaviours in a three dimensional ventricular cell model
• Multiscale heart simulation with cooperative stochastic cross-bridge dynamics and cellular structures

Cited in

(8)

• Long-time simulations with complex code using multiple nodes of Intel Xeon Phi knights landing
• Linkages of calcium-induced calcium release in a cardiomyocyte simulated by a system of seven coupled partial differential equations
• Optimal solution of a reaction--diffusion system with a control discrete source term
• Multiscale modeling and numerical simulation of calcium cycling in cardiac myocytes
• A memory-efficient finite volume method for advection-diffusion-reaction systems with nonsmooth sources
• Insight into spontaneous recurrent calcium waves in a 3-D cardiac cell based on analysis of a 1-D deterministic model
• Finite element approximation for time-dependent diffusion with measure-valued source
• Finite Volume Convergence for a Heat Equation with a Measure-Valued Source

Describes a project that uses

Uses Software

• MATLAB ODE suite
• SUNDIALS
• PETSc
• MPSalsa

This page was built for publication: Long-Time Simulations on High Resolution Meshes to Model Calcium Waves in a Heart Cell

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q3648596)