Numerical bifurcation analysis of the pattern formation in a cell based auxin transport model

DOI10.1007/S00285-012-0588-8zbMATH Open1291.37116arXiv1202.5161OpenAlexW1971268807WikidataQ51317774 ScholiaQ51317774MaRDI QIDQ378312FDOQ378312

Authors: Delphine Draelants, Jan Broeckhove, Gerrit T. S. Beemster, Wim Vanroose 

Publication date: 11 November 2013

Published in: Journal of Mathematical Biology (Search for Journal in Brave)

Abstract: Transport models of growth hormones can be used to reproduce the hormone accumulations that occur in plant organs. Mostly, these accumulation patterns are calculated using time step methods, even though only the resulting steady state patterns of the model are of interest. We examine the steady state solutions of the hormone transport model of Smith et al (2006) for a one-dimensional row of plant cells. We search for the steady state solutions as a function of three of the model parameters by using numerical continuation methods and bifurcation analysis. These methods are more adequate for solving steady state problems than time step methods. We discuss a trivial solution where the concentrations of hormones are equal in all cells and examine its stability region. We identify two generic bifurcation scenarios through which the trivial solution loses its stability. The trivial solution becomes either a steady state pattern with regular spaced peaks or a pattern where the concentration is periodic in time.

Full work available at URL: https://arxiv.org/abs/1202.5161

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zbMATH Keywords

stabilitybifurcationexistencehormonesparameter dependenceperiodic solution patterntransport modeltrivial solution

Mathematics Subject Classification ID

Dynamical systems in biology (37N25) Developmental biology, pattern formation (92C15) Plant biology (92C80)

Cites Work

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• Pattern Formation
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Cited In (11)

• Pattern formation in auxin flux
• Bifurcation analysis of reaction diffusion systems on arbitrary surfaces
• Regulated transport as a mechanism for pattern generation: capabilities for phyllotaxis and beyond
• Numerical bifurcation analysis and pattern formation in a minimal reaction-diffusion model for vegetation
• Homogeneous auxin steady states and spontaneous oscillations in flux-based auxin transport models
• Experimental tracking of limit-point bifurcations and backbone curves using control-based continuation
• Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
• Scaling relations for auxin waves
• Towards scalable automatic exploration of bifurcation diagrams for large-scale applications
• On polar auxin transport in plant cells
• Solving general auxin transport models with a numerical continuation toolbox in Python: PyNCT

Uses Software

• PyDSTool
• HomCont

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