Numerical bifurcation analysis of the pattern formation in a cell based auxin transport model
From MaRDI portal
(Redirected from Publication:378312)
Abstract: Transport models of growth hormones can be used to reproduce the hormone accumulations that occur in plant organs. Mostly, these accumulation patterns are calculated using time step methods, even though only the resulting steady state patterns of the model are of interest. We examine the steady state solutions of the hormone transport model of Smith et al (2006) for a one-dimensional row of plant cells. We search for the steady state solutions as a function of three of the model parameters by using numerical continuation methods and bifurcation analysis. These methods are more adequate for solving steady state problems than time step methods. We discuss a trivial solution where the concentrations of hormones are equal in all cells and examine its stability region. We identify two generic bifurcation scenarios through which the trivial solution loses its stability. The trivial solution becomes either a steady state pattern with regular spaced peaks or a pattern where the concentration is periodic in time.
Recommendations
- Numerical bifurcation analysis and pattern formation in a minimal reaction-diffusion model for vegetation
- On the mathematical modeling of auxin distribution patterns in a plant root
- Mathematical study for the mechanism of vascular and spot patterns by auxin and pin dynamics in plant development
- Bifurcation analysis of pattern formation in a two-dimensional hybrid reaction-transport model
- Mathematical modelling of auxin transport in plant tissues: flux meets signalling and growth
- A dynamical system for plant pattern formation: A rigorous analysis
- Homogeneous auxin steady states and spontaneous oscillations in flux-based auxin transport models
- Solving general auxin transport models with a numerical continuation toolbox in Python: PyNCT
- Multiscale modelling of auxin transport in the plant-root elongation zone
- BIFURCATION ANALYSIS OF HOPPING BEHAVIOR IN CELLULAR PATTERN-FORMING SYSTEMS
Cites work
- scientific article; zbMATH DE number 5688205 (Why is no real title available?)
- scientific article; zbMATH DE number 781821 (Why is no real title available?)
- scientific article; zbMATH DE number 5208397 (Why is no real title available?)
- BIFURCATION TRACKING ALGORITHMS AND SOFTWARE FOR LARGE SCALE APPLICATIONS
- Numerical continuation methods for dynamical systems. Path following and boundary value problems.
- Pattern Formation
- Practical bifurcation and stability analysis: from equilibrium to chaos.
Cited in
(11)- Fast derivatives of likelihood functionals for ODE based models using adjoint-state method
- On polar auxin transport in plant cells
- Numerical bifurcation analysis and pattern formation in a minimal reaction-diffusion model for vegetation
- Scaling relations for auxin waves
- Pattern formation in auxin flux
- Regulated transport as a mechanism for pattern generation: capabilities for phyllotaxis and beyond
- Towards scalable automatic exploration of bifurcation diagrams for large-scale applications
- Bifurcation analysis of reaction diffusion systems on arbitrary surfaces
- Solving general auxin transport models with a numerical continuation toolbox in Python: PyNCT
- Homogeneous auxin steady states and spontaneous oscillations in flux-based auxin transport models
- Experimental tracking of limit-point bifurcations and backbone curves using control-based continuation
This page was built for publication: Numerical bifurcation analysis of the pattern formation in a cell based auxin transport model
Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q378312)
