Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem

DOI10.1007/S00285-012-0586-XMaRDI QIDQ378317zbMATH OpenOpenAlexWikidataFDO

Authors Karthik Kota, George M. Weinstock, Makedonka Mitreva, Michael C. Wendl

Publication date 11 November 2013

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Copyright license Creative Commons Attribution 4.0 International

Full work available at URL https://doi.org/10.1007/s00285-012-0586-x

zbMATH Keywords

microbiomeDNA sequencingcoveragemetagenomics

Mathematics Subject Classification ID

Optimal statistical designs (62K05) Geometric probability and stochastic geometry (60D05) Factorials, binomial coefficients, combinatorial functions (05A10) Mathematical biology in general (92B99)

Recommendations

• Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
• Random Covering of Multiple One-Dimensional Domains with an Application to DNA Sequencing
• On the optimal design of genetic variant discovery studies
• Scaling metagenome sequence assembly with probabilistic de Bruijn graphs
• A Poisson model for the coverage problem with a genomic application

Cites work

• scientific article; zbMATH DE number 3594346 (Why is no real title available?)
• scientific article; zbMATH DE number 3249395 (Why is no real title available?)
• scientific article; zbMATH DE number 3104191 (Why is no real title available?)
• Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
• Random Covering of Multiple One-Dimensional Domains with an Application to DNA Sequencing
• SOLUTION TO A GEOMETRICAL PROBLEM IN PROBABILITY

Cited in

(2)

• Occupancy modeling of coverage distribution for whole genome shotgun DNA sequencing
• Random Covering of Multiple One-Dimensional Domains with an Application to DNA Sequencing

Describes a project that uses

Uses Software

• BWA
• Velvet

This page was built for publication: Coverage theories for metagenomic DNA sequencing based on a generalization of Stevens' theorem

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q378317)