Global energy minimisation and cotranslational protein folding of HP models

DOI10.1007/S10898-011-9791-1MaRDI QIDQ427384zbMATH OpenOpenAlexFDO

Authors Graham R. Wood, Yumi Patton, David W. Fisher

Publication date 13 June 2012

Published in Journal of Global Optimization (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10898-011-9791-1

zbMATH Keywords

global minimumprotein foldingcotranslationenergy surface

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Nonconvex programming, global optimization (90C26)

Recommendations

• Long proteins with unique optimal foldings in the H-P model
• Mathematical Foundations of Computer Science 2004
• Publication:4863352
• Protein folding in the HP model on grid lattices with diagonals
• Surmounting the multiple-minima problem in protein folding

Cites work

• scientific article; zbMATH DE number 835705 (Why is no real title available?)
• An exact algorithm for side-chain placement in protein design
• Computer simulations in molecular and protein conformations
• Optimization in computational chemistry and molecular biology. Local and global approaches. Conference, Princeton Univ., Princeton, NJ, USA, May 7--9, 1999

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