Protein folding in the HP model on grid lattices with diagonals

DOI10.1016/J.DAM.2006.04.031zbMATH Open1104.92021OpenAlexW1965695344MaRDI QIDQ867863FDOQ867863

Authors: Hans-Joachim Böckenhauer, Dirk Bongartz 

Publication date: 19 February 2007

Published in: Discrete Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.dam.2006.04.031

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zbMATH Keywords

approximationcomputational biologyprotein foldingHP model

Mathematics Subject Classification ID

Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

Cites Work

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• Opportunities for combinatorial optimization in computational biology
• Approximate protein folding in the HP side chain model on extended cubic lattices
• Title not available (Why is that?)
• Mathematical Foundations of Computer Science 2004
• Title not available (Why is that?)
• On the intractability of protein folding with a finite alphabet of amino acids
• The algorithmics of folding proteins on lattices.
• LATIN 2004: Theoretical Informatics

Cited In (23)

• Approximate protein folding in the HP side chain model on extended cubic lattices
• Title not available (Why is that?)
• Simulations of toy proteins
• Mathematical Foundations of Computer Science 2004
• Global energy minimisation and cotranslational protein folding of HP models
• Geometric Separators and Their Applications to Protein Folding in the HP-Model
• Experimental and Efficient Algorithms
• Automata, Languages and Programming
• LATIN 2004: Theoretical Informatics
• 3D protein structure prediction
• A weighted HP model for protein folding with diagonal contacts
• Approximation algorithms for three dimensional protein folding
• Approximation algorithms for three dimensional protein folding
• Techniques for Speeding up H-Core Protein Fitting
• The HP model of protein folding: a challenging testing ground for Wang-Landau sampling
• Protein folding and self-avoiding walks. Polyhedral studies and solutions.
• Title not available (Why is that?)
• Title not available (Why is that?)
• Combinatorial algorithms for protein folding in lattice models: a survey of mathematical results
• Stochastic protein folding simulation in the three-dimensional HP-model
• A filter-and-fan approach to the 2D HP model of the protein folding problem
• Protein Folding in 2D-Triangular Lattice Revisited
• Long proteins with unique optimal foldings in the H-P model

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