Sorting by Transpositions

From MaRDI portal
Publication:4388990

DOI10.1137/S089548019528280XzbMath0973.92014OpenAlexW2023749136MaRDI QIDQ4388990

Vineet Bafna, Pavel A. Pevzner

Publication date: 11 May 1998

Published in: SIAM Journal on Discrete Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1137/s089548019528280x




Related Items (85)

Reconstructing an ancestral genome using minimum segments duplications and reversals.A topological framework for signed permutationsThe complexity of genome rearrangement combinatorics under the infinite sites modelA 3.5-Approximation Algorithm for Sorting by Intergenic TranspositionsSorting by multi-cut rearrangementsAPPROXIMATE BLOCK SORTINGPosition and content paradigms in genome rearrangements: the wild and crazy world of permutations in genomicsSigned Hultman numbers and signed generalized commuting probability in finite groupsApproximation algorithms for sorting by bounded singleton movesFinding similar/diverse solutions in answer set programmingExploiting pseudo-locality of interchange distanceOptimal algorithms for uncovering synteny problemExemplar or matching: modeling DCJ problems with unequal content genome dataSorting by \(k\)-cuts on signed permutationsA new approach for the reversal distance with indels and moves in intergenic regionsStructural properties and tractability results for linear syntenyImproved upper bound for sorting permutations by prefix transpositionsA versatile combinatorial approach of studying products of long cycles in symmetric groupsComputing similarity distances between rankingsAn 5/4-Approximation Algorithm for Sorting Permutations by Short Block MovesPermutation patterns in genome rearrangement problems: the reversal modelBlock Sorting Is APX-HardSorting by prefix block-interchangesRearrangement events on circular genomesSorting permutations: Games, genomes, and cyclesA new approximation algorithm for sorting of signed permutationsApproximate String Matching with Address Bit ErrorsAn efficient algorithm for one-sided block ordering problem under block-interchange distanceAn approximation algorithm for genome sorting by reversals to recover all adjacenciesA 2.25-Approximation Algorithm for Cut-and-Paste Sorting of Unsigned Circular PermutationsExact Markov chain-based runtime analysis of a discrete particle swarm optimization algorithm on sorting and OneMaxBlock crossings in one-sided tanglegramsThe transposition median problem is NP-completeA new approximation algorithm for cut-and-paste sorting of unsigned circular permutationsA \((1+\varepsilon)\)-approximation algorithm for sorting by short block-movesGirth of pancake graphsUnnamed ItemPattern matching with address errors: rearrangement distancesEdit Distances and Factorisations of Even PermutationsBlock Sorting is HardMulti-break rearrangements and chromosomal evolutionSorting by prefix reversals and prefix transpositionsSorting permutations with transpositions in \(O(n^3)\) amortized timeEdit distance with move operationsEdit distance with block deletionsHamiltonian cycles in unitary prefix transposition rearrangement graphsPancake flipping and sorting permutationsApproximation algorithms for sorting permutations by extreme block-interchangesCIRCULAR INVERSIONS OF PERMUTATIONS AND THEIR USE IN SORTING PROBLEMSTighter upper bound for sorting permutations with prefix transpositionsCOMPUTING SIGNED PERMUTATIONS OF POLYGONSApproximation algorithms for sorting by length-weighted prefix and suffix operationsExpected number of breakpoints after \(t\) random reversals in genomes with duplicate genesSorting by Transpositions Is DifficultTransposition Rearrangement: Linear Algorithm for Length-Cost ModelDiameter bounds and recursive properties of Full-Flag Johnson graphsUniquely pressable graphs: characterization, enumeration, and recognitionA 14/11-approximation algorithm for sorting by short block-movesOn maximal instances for the original syntenic distanceApproximate string matching with stuck address bitsA simpler and faster 1.5-approximation algorithm for sorting by transpositionsSigned genome rearrangement by reversals and transpositions: Models and approximationsOn sorting by 3-bounded transpositionsAn improved algorithm for sorting by block-interchanges based on permutation groupsOn the effective and automatic enumeration of polynomial permutation classesInterchange rearrangement: the element-cost modelEfficient computations of \(\ell _1\) and \(\ell _{\infty }\) rearrangement distancesA quadratic time 2-approximation algorithm for block sortingOn the computational complexity of closest genome problemsAn approximation algorithm for sorting by reversals and transpositionsFinding All Sorting Tandem Duplication Random Loss OperationsReversal and transposition mediansReversals distance considering flexible intergenic regions sizesAn Audit Tool for Genome Rearrangement AlgorithmsBounding prefix transposition distance for strings and permutationsSorting by bounded block-movesHultman Numbers and Generalized Commuting Probability in Finite GroupsApproximate string matching with address bit errorsThe Emperor Has No Caps! A Comparison of DCJ and Algebraic DistancesThe role of colour flows in matrix element computations and Monte Carlo simulationsImproving the algorithm of Bafna and Pevzner for the problem of sorting by transpositions: a practical approachA new upper bound for sorting permutations with prefix transpositions\((1+\varepsilon)\)-approximation of sorting by reversals and transpositions.Approximation algorithms for sorting by \(k\)-cuts on signed permutationsOn Sorting by 3-Bounded Transpositions




This page was built for publication: Sorting by Transpositions