Alignment of protein mass spectrometry data by integrated Markov chain shifting method

DOI10.4310/SII.2009.V2.N3.A6zbMATH Open1245.62137MaRDI QIDQ440109FDOQ440109

Weiping Ma, Zhanfeng Wang, Yang Feng, Zhiliang Ying, Yaning Yang

Publication date: 18 August 2012

Published in: Statistics and Its Interface (Search for Journal in Brave)

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Mathematics Subject Classification ID

Applications of Markov chains and discrete-time Markov processes on general state spaces (social mobility, learning theory, industrial processes, etc.) (60J20) Nonparametric estimation (62G05) Applications of statistics to biology and medical sciences; meta analysis (62P10) Biochemistry, molecular biology (92C40)

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• A Markov-chain model for the analysis of high-resolution enzymatically \(^{18}\)O-labeled mass spectra
• A statistical method for chromatographic alignment of LC-MS data
• Analysis of proteomics data: block \(k\)-mean alignment
• Functional and parametric estimation in a semi- and nonparametric model with application to mass-spectrometry data
• Combinatorial Pattern Matching

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