Practical consideration of genotype imputation: sample size window size, reference choice, and untyped rate

DOI10.4310/SII.2011.V4.N3.A8MaRDI QIDQ440321zbMATH OpenOpenAlexWikidataFDO

Authors Boshao Zhang, Degui Zhi, Kui Zhang, Guimin Gao, Nita A. Limdi, Nianjun Liu

Publication date 18 August 2012

Published in Statistics and Its Interface (Search for Journal in Brave)

Full work available at URL https://doi.org/10.4310/sii.2011.v4.n3.a8

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Genetics and epigenetics (92D10)

Recommendations

• Genotype imputation in a coalescent model with infinitely-many-sites mutation
• Assessing and comparison of different machine learning methods in parent-offspring trios for genotype imputation
• Methods for testing association between uncertain genotypes and quantitative traits
• Using linear predictors to impute allele frequencies from summary or pooled genotype data
• Increasing the power of association studies by imputation-based sparse tag SNP selection

Cited in

(2)

• Genotype imputation in a coalescent model with infinitely-many-sites mutation
• Assessing and comparison of different machine learning methods in parent-offspring trios for genotype imputation

This page was built for publication: Practical consideration of genotype imputation: sample size window size, reference choice, and untyped rate

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q440321)