Detecting a Changed Segment in DNA Sequences

DOI10.1111/1467-9876.00167zbMATH Open1057.62534OpenAlexW2141560901MaRDI QIDQ4493465FDOQ4493465

Daniel A. Henderson, P. J. Avery

Publication date: 8 January 2003

Published in: Journal of the Royal Statistical Society Series C: Applied Statistics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1111/1467-9876.00167

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

Cited In (12)

• A mixture integer-valued autoregressive model with a structural break
• Local stationarity and time-inhomogeneous Markov chains
• Estimation of change points of infinite dimensional parameters in short epidemics
• Asymptotic independence of three statistics of maximal segmental scores
• Estimating a changed segment in a sample
• Change-point model selection via AIC
• A Conservative Test for Multiple Comparison Based on Highly Correlated Test Statistics
• Testing epidemic change in nearly nonstationary process with statistics based on residuals
• The limit distribution of the maximum increment of a random walk with regularly varying jump size distribution
• Scalable test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome
• Off-line testing for a changed segment in the sample variance
• Change-point problems: bibliography and review

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