Detecting a Changed Segment in DNA Sequences

DOI10.1111/1467-9876.00167MaRDI QIDQ4493465zbMATH OpenOpenAlexFDO

Authors P. J. Avery, Daniel A. Henderson

Publication date 8 January 2003

Published in Journal of the Royal Statistical Society Series C: Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1111/1467-9876.00167

Mathematics Subject Classification ID

Nonparametric hypothesis testing (62G10) Applications of statistics to biology and medical sciences; meta analysis (62P10) Protein sequences, DNA sequences (92D20)

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• Change-point model selection via AIC
• The limit distribution of the maximum increment of a random walk with regularly varying jump size distribution
• Change-point problems: bibliography and review
• Asymptotic independence of three statistics of maximal segmental scores
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• Estimating change-points in biological sequences via the cross-entropy method
• Testing epidemic change in nearly nonstationary process with statistics based on residuals
• Off-line testing for a changed segment in the sample variance
• Estimation of change points of infinite dimensional parameters in short epidemics
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• A Conservative Test for Multiple Comparison Based on Highly Correlated Test Statistics
• A mixture integer-valued autoregressive model with a structural break
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• Scalable test of statistical significance for protein-DNA binding changes with insertion and deletion of bases in the genome
• Local stationarity and time-inhomogeneous Markov chains

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