A non-parametric method for detecting specificity determining sites in protein sequence alignments

DOI10.2202/1544-6115.1584zbMATH Open1296.92036OpenAlexW2031218175MaRDI QIDQ458223FDOQ458223

Authors Walter R. Gilks, Chinying Wang 

Publication date 7 October 2014

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.2202/1544-6115.1584

zbMATH Keywords

parsimonyphylogeneticsmultiple sequence alignmentprotein sequencerandomisationspecificity determining sitessubfamily

Mathematics Subject Classification ID

General biostatistics (92B15)

Recommendations

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Cited In (4)

• New Methods for Detecting Lineage-Specific Selection
• Finding important sites in protein sequences
• SDPhound, a mutual information-based method to investigate specificity-determining positions
• SDSparsimony

Uses Software

• R

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