DNA pooling and statistical tests for the detection of single nucleotide polymorphisms

DOI10.1515/1544-6115.1763MaRDI QIDQ461660zbMATH OpenOpenAlexWikidataFDO

Authors David Mark Ramsey, Andreas Futschik

Publication date 13 October 2014

Published in Statistical Applications in Genetics and Molecular Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1515/1544-6115.1763

zbMATH Keywords

genome sequencingoptimal DNA poolingsingle nucleotide polymorphismstatistical inference

Mathematics Subject Classification ID

Genetics and epigenetics (92D10) Protein sequences, DNA sequences (92D20)

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Cited in

(8)

• Single-sample SNP detection by empirical Bayes method using next-generation sequencing data
• On the quantity and quality of single nucleotide polymorphisms in the human genome.
• On the optimal design of genetic variant discovery studies
• Pooling design and bias correction in DNA library screening
• Design and statistical analysis of pooled next generation sequencing for rare variants
• Assessing Population Differentiation and Isolation from Single-Nucleotide Polymorphism Data
• Spalter: a meta machine learning approach to distinguish true DNA variants from sequencing artefacts
• Detecting mutations in mixed sample sequencing data using empirical Bayes

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