Single-sample SNP detection by empirical Bayes method using next-generation sequencing data

DOI10.4310/SII.2015.V8.N4.A5MaRDI QIDQ1747473zbMATH OpenOpenAlexFDO

Authors Weijie Ding, Qiang Kou, Qiuya Xu, Na You, Xue-Qin Wang

Publication date 8 May 2018

Published in Statistics and Its Interface (Search for Journal in Brave)

Full work available at URL https://doi.org/10.4310/sii.2015.v8.n4.a5

zbMATH Keywords

dispersion of minor allele frequencygenomic structural variation detectiongenotyping

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Empirical decision procedures; empirical Bayes procedures (62C12)

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• An empirical Bayes testing procedure for detecting variants in analysis of next generation sequencing data
• Model-based quality assessment and base-calling for second-generation sequencing data
• abSNP: RNA-Seq SNP calling in repetitive regions via abundance estimation

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