The Regulation of Gene Expression by Operons and the Local Modeling Framework

DOI10.1016/B978-0-12-814066-6.00004-0MaRDI QIDQ4627738zbMATH OpenOpenAlexFDO

Authors M. Macauley, Andy Jenkins, R. Davies

Publication date 11 March 2019

Published in Algebraic and Combinatorial Computational Biology (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1016/b978-0-12-814066-6.00004-0

zbMATH Keywords

gene expressioncomputational algebraoperons

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

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Cited in

(4)

• A model of gene expression and regulation in an artificial cellular organism.
• Bistability and asynchrony in a Boolean model of the \textsc{L}-arabinose operon in \textit{Escherichia coli}
• Mechanisms of gene regulation: Boolean network models of the lactose operon in \textit{Escherichia coli}
• Analytical study of the multiplicity of regulatory mechanisms in the tryptophan operon

Describes a project that uses

Uses Software

• GDSCalc
• TURING
• CoCalc
• BooleSim
• Docker
• Ginsim
• BoolNet
• SINGULAR
• Macaulay2

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