Flux modules in metabolic networks
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Publication:471076
DOI10.1007/S00285-013-0731-1zbMATH Open1337.92078OpenAlexW2094542248WikidataQ45814645 ScholiaQ45814645MaRDI QIDQ471076FDOQ471076
Authors: Arne C. Müller, Alexander Bockmayr 
Publication date: 13 November 2014
Published in: Journal of Mathematical Biology (Search for Journal in Brave)
Full work available at URL: https://doi.org/10.1007/s00285-013-0731-1
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Applications of graph theory (05C90) Biochemistry, molecular biology (92C40) Systems biology, networks (92C42)
Cites Work
- A new constraint-based description of the steady-state flux cone of metabolic networks
- Convex Polytopes
- Is maximization of molar yield in metabolic networks favoured by evolution?
- Thermodynamic constraints for biochemical networks
- Monte Carlo sampling and principal component analysis of flux distributions yield topological and modular information on metabolic networks
- A variational principle for computing nonequilibrium fluxes and potentials in genome-scale biochemical networks
Cited In (19)
- Molecular codes in large metabolic networks
- Modular decomposition of metabolic systems via null-space analysis
- Fast computation of minimal elementary decompositions of metabolic flux vectors
- Finding MEMo: minimum sets of elementary flux modes
- Quantitative flux coupling analysis
- Determination of flux directions by thermodynamic network analysis: Computing informative metabolite pools
- Generic flux coupling analysis
- Quantifying the effects of the division of labor in metabolic pathways
- Hybrid metabolic network completion
- Metabolic P systems for biochemical dynamics
- On the geometry of elementary flux modes
- A Markov constraint to uniquely identify elementary flux mode weights in unimolecular metabolic networks
- Persistence in metabolic nets
- On flux coupling analysis of metabolic subsystems
- Reaction routes in biochemical reaction systems: algebraic properties, validated calculation procedure and example from nucleotide metabolism
- Structural analysis of metabolic networks based on flux centrality
- Metabolic networks, elementary flux modes, and polyhedral cones
- Monte Carlo sampling and principal component analysis of flux distributions yield topological and modular information on metabolic networks
- Genetically Regulated Metabolic Networks: Gale-Nikaido Modules and Differential Inequalities
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