Discretization orders for protein side chains

DOI10.1007/s10898-013-0135-1zbMath1312.90069OpenAlexW2070122352WikidataQ62562146 ScholiaQ62562146MaRDI QIDQ486406

Andrea Cassioli, Antonio Mucherino, Virginia Costa, Nelson F. Maculan, Carlile C. Lavor, Luiz Mariano Carvalho

Publication date: 15 January 2015

Published in: Journal of Global Optimization (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1007/s10898-013-0135-1

zbMATH Keywords

proteinscombinatorial optimizationdistance geometrydiscretization ordersbranch-and-prune

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Combinatorial optimization (90C27)

Related Items (10)

Recent advances on the interval distance geometry problem ⋮ Clifford algebra and the discretizable molecular distance geometry problem ⋮ Minimal NMR distance information for rigidity of protein graphs ⋮ Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures ⋮ Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint ⋮ Assigned and unassigned distance geometry: applications to biological molecules and nanostructures ⋮ On the estimation of unknown distances for a class of Euclidean distance matrix completion problems with interval data ⋮ Tuning interval branch-and-prune for protein structure determination ⋮ Optimal partial discretization orders for discretizable distance geometry ⋮ On the polynomiality of finding \(^K\text{DMDGP}\) re-orders

Cites Work

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• Experimental algorithms. 10th international symposium, SEA 2011, Kolimpari, Chania, Crete, Greece, May 5--7, 2011. Proceedings
• Discretization orders for distance geometry problems
• The discretizable molecular distance geometry problem
• Molecular modeling and simulation. An interdisciplinary guide
• The interval branch-and-prune algorithm for the discretizable molecular distance geometry problem with inexact distances
• Distance Geometry
• Molecular distance geometry methods: from continuous to discrete
• Euclidean Distance Geometry and Applications

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