Discretization orders for protein side chains

DOI10.1007/S10898-013-0135-1MaRDI QIDQ486406zbMATH OpenOpenAlexDBLPWikidataFDO

Authors Virginia Costa, Antonio Mucherino, Andrea Cassioli, Carlile Lavor, Luiz Mariano Carvalho, Nelson Maculan

Publication date 15 January 2015

Published in Journal of Global Optimization (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/s10898-013-0135-1

zbMATH Keywords

combinatorial optimizationdistance geometryproteinsdiscretization ordersbranch-and-prune

Mathematics Subject Classification ID

Applications of mathematical programming (90C90) Combinatorial optimization (90C27)

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Cites work

• scientific article; zbMATH DE number 2188749 (Why is no real title available?)
• Discretization orders for distance geometry problems
• Distance Geometry
• Euclidean distance geometry and applications
• Experimental algorithms. 10th international symposium, SEA 2011, Kolimpari, Chania, Crete, Greece, May 5--7, 2011. Proceedings
• Hyperbolic smoothing and penalty techniques applied to molecular structure determination
• Molecular distance geometry methods: from continuous to discrete
• Molecular modeling and simulation. An interdisciplinary guide
• The discretizable molecular distance geometry problem
• The interval branch-and-prune algorithm for the discretizable molecular distance geometry problem with inexact distances

Cited in

(12)

• On the estimation of unknown distances for a class of Euclidean distance matrix completion problems with interval data
• Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures
• Recent advances on the interval distance geometry problem
• On the polynomiality of finding \(^K\text{DMDGP}\) re-orders
• Minimal NMR distance information for rigidity of protein graphs
• Optimal partial discretization orders for discretizable distance geometry
• On the definition of artificial backbones for the discretizable molecular distance geometry problem
• Exploration of conformations for an intrinsically disordered protein
• Optimal Discretization Orders for Distance Geometry: A Theoretical Standpoint
• Assigned and unassigned distance geometry: applications to biological molecules and nanostructures
• Clifford algebra and the discretizable molecular distance geometry problem
• Tuning interval branch-and-prune for protein structure determination

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