Small-scale inference: empirical Bayes and confidence methods for as few as a single comparison

DOI10.1111/INSR.12064zbMATH Open1416.62430arXiv1104.0341OpenAlexW2963164184WikidataQ57826617 ScholiaQ57826617MaRDI QIDQ4968612FDOQ4968612

Authors: David R. Bickel 

Publication date: 16 July 2019

Published in: International Statistical Review (Search for Journal in Brave)

Abstract: By restricting the possible values of the proportion of null hypotheses that are true, the local false discovery rate (LFDR) can be estimated using as few as one comparison. The proportion of proteins with equivalent abundance was estimated to be about 20% for patient group I and about 90% for group II. The simultaneously-estimated LFDRs give approximately the same inferences as individual-protein confidence levels for group I but are much closer to individual-protein LFDR estimates for group II. Simulations confirm that confidence-based inference or LFDR-based inference performs markedly better for low or high proportions of true null hypotheses, respectively.

Full work available at URL: https://arxiv.org/abs/1104.0341

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zbMATH Keywords

multiple testingempirical Bayesconstrained maximum likelihood estimationconfidence distributionfoundations of statisticsLindley's paradoxrestricted parameter spacelocal false discovery ratemultiple comparison procedureobserved confidence level

Mathematics Subject Classification ID

Foundations and philosophical topics in statistics (62A01) Empirical decision procedures; empirical Bayes procedures (62C12) Paired and multiple comparisons; multiple testing (62J15)

Cited In (11)

• Empirical Bayes interval estimates that are conditionally equal to unadjusted confidence intervals or to default prior credibility intervals
• Correcting false discovery rates for their bias toward false positives
• Large-scale inference. Empirical Bayes methods for estimation, testing, and prediction
• Model fusion and multiple testing in the likelihood paradigm: shrinkage and evidence supporting a point null hypothesis
• Confidence distributions applied to propagating uncertainty to inference based on estimating the local false discovery rate: a fiducial continuum from confidence sets to empirical Bayes set estimates as the number of comparisons increases
• Simple estimators of false discovery rates given as few as one or two \(p\)-values without strong parametric assumptions
• Blending Bayesian and frequentist methods according to the precision of prior information with applications to hypothesis testing
• Estimators of the local false discovery rate designed for small numbers of tests
• Empirical Bayes methods for estimation and confidence intervals in high-dimensional problems
• Sharpen statistical significance: evidence thresholds and Bayes factors sharpened into Occam's razor
• Interval estimation, point estimation, and null hypothesis significance testing calibrated by an estimated posterior probability of the null hypothesis

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