Mean field analysis of a spatial stochastic model of a gene regulatory network

DOI10.1007/S00285-014-0837-0MaRDI QIDQ500347zbMATH OpenOpenAlexWikidataFDO

Authors M. A. J. Chaplain, Anastasios Matzavinos, Marc Sturrock, Philip J. Murray

Publication date 2 October 2015

Published in Journal of Mathematical Biology (Search for Journal in Brave)

Full work available at URL http://hdl.handle.net/10023/7709

zbMATH Keywords

data clusteringfeedback loopgene regulatory networkmean fieldspatial stochastic model

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Systems biology, networks (92C42) Feedback control (93B52)

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Cites work

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• Clustering of time series data -- a survey
• Computational cell biology
• Deterministic versus stochastic cell polarisation through wave-pinning
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• Estimating the number of clusters in a data set via the gap statistic
• Genetic control models with diffusion and delays
• scientific article; zbMATH DE number 3702461 (Why is no real title available?)
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• Logical identification of all steady states: The concept of feedback loop characteristic states
• Modeling transcriptional control in gene networks -- methods, recent results, and future directions
• Models of genetic control by repression with time delays and spatial effects
• Random walk distances in data clustering and applications
• Spatio-temporal modelling of the Hes1 and p53-Mdm2 intracellular signalling pathways
• The role of dimerisation and nuclear transport in the Hes1 gene regulatory network
• Transcriptional stochasticity in gene expression

Cited in

(8)

• The influence of nuclear compartmentalisation on stochastic dynamics of self-repressing gene expression
• Spatial-stochastic modelling of synthetic gene regulatory networks
• Stationary moments, distribution conjugation and phenotypic regions in stochastic gene transcription
• Endogenous miRNA sponges mediate the generation of oscillatory dynamics for a non-coding RNA network
• Type-dependent stochastic Ising model describing the dynamics of a non-symmetric feedback module
• Spatio-temporal models of synthetic genetic oscillators
• Mean field theory for biology inspired duplication-divergence network model
• Stochastic models and numerical algorithms for a class of regulatory gene networks

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