High-dimensional count and compositional data analysis in\\ microbiome studies

DOI10.1360/N012017-00147MaRDI QIDQ5063802zbMATH OpenOpenAlexFDO

Authors Changjing Wu, Shun He, Minghua Deng

Publication date 21 March 2022

Published in SCIENTIA SINICA Mathematica (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1360/n012017-00147

zbMATH Keywords

compositional dataregression modelidentifiabilitysparsityDirichlet-multinomial modelhigh-dimensional count

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10)

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Cited in

(14)

• A logistic normal multinomial regression model for microbiome compositional data analysis
• Statistical analysis of microbiome data with R
• A review on probabilistic models used in microbiome studies
• Dirichlet-tree multinomial mixtures for clustering microbiome compositions
• Compositional mediation analysis for microbiome studies
• A semiparametric model for between‐subject attributes: Applications to beta‐diversity of microbiome data
• Zero‐inflated Poisson factor model with application to microbiome read counts
• Assessing mediating effects of high‐dimensional microbiome measurements in dietary intervention studies
• Robust Shape Matrix Estimation for High-Dimensional Compositional Data with Application to Microbial Inter-Taxa Analysis
• A model for paired-multinomial data and its application to analysis of data on a taxonomic tree
• Information content of high-order associations of the human gut microbiota network
• Compositional knockoff filter for high‐dimensional regression analysis of microbiome data
• Scalable estimation and regularization for the logistic normal multinomial model
• Prediction analysis for microbiome sequencing data

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