Distance metrics for ranked evolutionary trees

DOI10.1073/PNAS.1922851117MaRDI QIDQ5073196zbMATH OpenOpenAlexWikidataFDO

Authors Noah A. Rosenberg, Julia A. Palacios, Jae Hee Kim

Publication date 5 May 2022

Published in Proceedings of the National Academy of Sciences (Search for Journal in Brave)

Copyright license Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International

Full work available at URL https://doi.org/10.1073/pnas.1922851117

Mathematics Subject Classification ID

Problems related to evolution (92D15)

Recommendations

• Analyzing sets of phylogenetic trees using metrics
• Distributions of topological tree metrics between a species tree and a gene tree
• Statistics for phylogenetic trees
• A parsimony-based metric for phylogenetic trees
• Information metrics for phylogenetic trees via distributions of discrete and continuous characters

Cites work

• Birth-death models and coalescent point processes: the shape and probability of reconstructed phylogenies
• Coalescents with simultaneous multiple collisions
• Comparison of phylogenetic trees
• Computing medians and means in Hadamard spaces
• Finding the best resolution for the Kingman-Tajima coalescent: theory and applications
• Geometry of the space of phylogenetic trees
• scientific article; zbMATH DE number 3661335 (Why is no real title available?)
• scientific article; zbMATH DE number 850224 (Why is no real title available?)
• scientific article; zbMATH DE number 6159604 (Why is no real title available?)
• On the computational complexity of the rooted subtree prune and regraft distance
• Some properties of clasical multi-dimesional scaling
• Statistics for phylogenetic trees
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• Subtree transfer operations and their induced metrics on evolutionary trees
• Testing Statistical Hypotheses
• The probabilities of rooted tree-shapes generated by random bifurcation
• Twist–Rotation Transformations of Binary Trees and Arithmetic Expressions
• Uncertainty in Phylogenetic Tree Estimates

Cited in

(13)

• Two results about the Sackin and Colless indices for phylogenetic trees and their shapes
• Statistical challenges in tracking the evolution of SARS-CoV-2
• On asymptotic joint distributions of cherries and pitchforks for random phylogenetic trees
• Distributions of topological tree metrics between a species tree and a gene tree
• An Evolutionary Distance Based on Maximal Unique Matches
• Distance-driven adaptive trees in biological metric spaces: uninformed accretion does not prevent convergence
• scientific article; zbMATH DE number 5186265 (Why is no real title available?)
• scientific article; zbMATH DE number 6277703 (Why is no real title available?)
• Distributions of cherries and pitchforks for the Ford model
• Lagged couplings diagnose Markov chain Monte Carlo phylogenetic inference
• Distributions of 4-subtree patterns for uniform random unrooted phylogenetic trees
• Metric statistics: exploration and inference for random objects with distance profiles
• Spaces of ranked tree-child networks

This page was built for publication: Distance metrics for ranked evolutionary trees

Report a bug (only for logged in users!)Click here to report a bug for this page (MaRDI item Q5073196)