Analytical Singular Value Decomposition for a Class of Stoichiometry Matrices

DOI10.1137/21M1418927zbMath1494.15010arXiv2104.13550WikidataQ114074038 ScholiaQ114074038MaRDI QIDQ5094214

J. M. Wentz, Jeffrey C. Cameron, David M. Bortz

Publication date: 2 August 2022

Published in: SIAM Journal on Matrix Analysis and Applications (Search for Journal in Brave)

Full work available at URL: https://arxiv.org/abs/2104.13550

zbMATH Keywords

singular value decompositionflux balance analysisstoichiometry matrix

Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20) PDEs in connection with biology, chemistry and other natural sciences (35Q92) Biochemistry, molecular biology (92C40) Eigenvalues, singular values, and eigenvectors (15A18) Chemically reacting flows (80A32) Chemical kinetics in thermodynamics and heat transfer (80A30) Tensor products of linear operators (47A80)

Uses Software

• GitHub

Cites Work

• Certifying spatially uniform behavior in reaction-diffusion PDE and compartmental ODE systems
• The ubiquitous Kronecker product
• Perturbation theory for linear operators.
• Systemic metabolic reactions are obtained by singular value decomposition of genome-scale stoichiometric matrices
• Matrix-oriented discretization methods for reaction-diffusion PDEs: comparisons and applications
• Boundedness of a Class of Spatially Discrete Reaction-Diffusion Systems

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