Phylogenetic tree selection by the adjustedk-means approach

DOI10.1080/02664763.2011.610442MaRDI QIDQ5126977zbMATH OpenOpenAlexWikidataFDO

Authors Hsiuying Wang, Shan-Lin Hung

Publication date 21 October 2020

Published in Journal of Applied Statistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1080/02664763.2011.610442

zbMATH Keywords

\(k\)-meansadjusted \(k\)-meansmisclassification errorphylogenetic tree

Mathematics Subject Classification ID

Statistics (62-XX)

Recommendations

• Discriminative measures for comparison of phylogenetic trees
• Fitting Tree Metrics: Hierarchical Clustering and Phylogeny
• A parsimony-based metric for phylogenetic trees
• A DISCRIMINATION MEASURE FOR PHYLOGENETIC TREE CONSTRUCTION
• Analyzing sets of phylogenetic trees using metrics
• Consensus of phylogenetic trees using genetic algorithms
• scientific article; zbMATH DE number 1974599
• The Performance of Phylogenetic Methods on Trees of Bounded Diameter
• Bootstrapping phylogenetic trees: theory and methods

Cites work

• Extension to the validation of classification trees
• Finding Groups in Data
• scientific article; zbMATH DE number 41467 (Why is no real title available?)
• scientific article; zbMATH DE number 3469876 (Why is no real title available?)
• scientific article; zbMATH DE number 3340881 (Why is no real title available?)
• Improved variance estimators for one- and two-parameter models of nucleotide substitution
• Improving the precision of classification trees
• Validating Classification Trees
• Weighting variables in K-means clustering

Cited in

(2)

• Nonbifurcating Phylogenetic Tree Inference via the Adaptive LASSO
• Detection of Adaptive Shifts on Phylogenies by using Shifted Stochastic Processes on a Tree

Describes a project that uses

Uses Software

• MEGA
• MEGA4
• clusfind

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