Fundamental Decompositions and Multistationarity of Power-Law Kinetic Systems

zbMATH Open1472.92355arXiv1908.04593MaRDI QIDQ5159237FDOQ5159237

Authors: Bryan S. Hernandez, Eduardo R. Mendoza, Aurelio A. de los Reyes V 

Publication date: 26 October 2021

Abstract: The fundamental decomposition of a chemical reaction network (also called its "$mathscrF$-decomposition") is the set of subnetworks generated by the partition of its set of reactions into the "fundamental classes" introduced by Ji and Feinberg in 2011 as the basis of their "higher deficiency algorithm" for mass action systems. The first part of this paper studies the properties of the $mathscrF$-decomposition, in particular, its independence (i.e., the network's stoichiometric subspace is the direct sum of the subnetworks' stoichiometric subspaces) and its incidence-independence (i.e., the image of the network's incidence map is the direct sum of the incidence maps' images of the subnetworks). We derive necessary and sufficient conditions for these properties and identify network classes where the $mathscrF$-decomposition coincides with other known decompositions. The second part of the paper applies the above-mentioned results to improve the Multistationarity Algorithm for power-law kinetic systems (MSA), a general computational approach that we introduced in previous work. We show that for systems with non-reactant determined interactions but with an independent $mathscrF$-decomposition, the transformation to a dynamically equivalent system with reactant-determined interactions -- required in the original MSA -- is not necessary. We illustrate this improvement with the subnetwork of Schmitz's carbon cycle model recently analyzed by Fortun et al.

Full work available at URL: https://arxiv.org/abs/1908.04593

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Mathematics Subject Classification ID

Classical flows, reactions, etc. in chemistry (92E20)

Cited In (11)

• Positive equilibria of Hill-type kinetic systems
• Positive steady states of a class of power law systems with independent decompositions
• Weakly reversible CF-decompositions of chemical kinetic systems
• A computational approach to multistationarity of power-law kinetic systems
• Common complexes of decompositions and complex balanced equilibria of chemical reaction networks
• On the independence of fundamental decompositions of power-law kinetic systems
• Analysis of equilibria properties of chemical reaction networks with independent decompositions for classes of kinetics
• Title not available (Why is that?)
• A network-based parametrization of positive steady states of power-law kinetic systems
• Independent, incidence independent and weakly reversible decompositions of chemical reaction networks
• Positive equilibria of a class of power-law kinetics

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