The Reaction-Diffusion Master Equation as an Asymptotic Approximation of Diffusion to a Small Target

From MaRDI portal
Publication:5189577


DOI10.1137/070705039zbMath1195.35177WikidataQ60140980 ScholiaQ60140980MaRDI QIDQ5189577

Samuel A. Isaacson

Publication date: 17 March 2010

Published in: SIAM Journal on Applied Mathematics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1137/070705039


82C22: Interacting particle systems in time-dependent statistical mechanics

35K57: Reaction-diffusion equations

92E20: Classical flows, reactions, etc. in chemistry

41A60: Asymptotic approximations, asymptotic expansions (steepest descent, etc.)

65M06: Finite difference methods for initial value and initial-boundary value problems involving PDEs

82C20: Dynamic lattice systems (kinetic Ising, etc.) and systems on graphs in time-dependent statistical mechanics

82C31: Stochastic methods (Fokker-Planck, Langevin, etc.) applied to problems in time-dependent statistical mechanics


Related Items

Multiscale Simulation of Stochastic Reaction-Diffusion Networks, A Route to the Hydrodynamic Limit of a Reaction-Diffusion Master Equation Using Gradient Structures, A first-passage kinetic Monte Carlo method for reaction-drift-diffusion processes, Efficient stochastic simulation of simultaneous reaction and diffusion in a gas-liquid interface, Editorial: Special issue on stochastic modelling of reaction-diffusion processes in biology, Stochastic reaction-diffusion processes with embedded lower-dimensional structures, Stochastic analysis of reaction-diffusion processes, A comparison of bimolecular reaction models for stochastic reaction-diffusion systems, Numerical solution of linear Volterra integral equations of the second kind with sharp gradients, Adaptive mesh refinement for stochastic reaction-diffusion processes, A new method for choosing the computational cell in stochastic reaction-diffusion systems, Stochastic simulation algorithms for solving narrow escape diffusion problems by introducing a drift to the target, Discontinuous Galerkin \(h p\)-adaptive methods for multiscale chemical reactors: quiescent reactors, Coupling sample paths to the thermodynamic limit in Monte Carlo estimators with applications to gene expression, Multiscale modeling of diffusion in a crowded environment, A hybrid fluctuating hydrodynamics and kinetic Monte Carlo method for modeling chemically-powered nanoscale motion, Coarse-graining and hybrid methods for efficient simulation of stochastic multi-scale models of tumour growth, Double-shift-invert Arnoldi method for computing the matrix exponential, Effects of different discretisations of the Laplacian upon stochastic simulations of reaction-diffusion systems on both static and growing domains, A random walk approach to transport in tissues and complex media: from microscale descriptions to macroscale models, Stochastic Turing patterns: analysis of compartment-based approaches, An unstructured mesh convergent reaction-diffusion master equation for reversible reactions, Spatial stochastic intracellular kinetics: a review of modelling approaches, An adaptive algorithm for simulation of stochastic reaction-diffusion processes, A probabilistic framework for particle-based reaction-diffusion dynamics using classical Fock space representations, Approximation and inference methods for stochastic biochemical kinetics—a tutorial review, Stochastic switching in biology: from genotype to phenotype