Molecular spiders in one dimension

DOI10.1088/1742-5468/2007/08/P08027MaRDI QIDQ5239398zbMATH OpenOpenAlexWikidataFDO

Authors Tibor Antal, P. L. Krapivsky, Kirone Mallick

Publication date 22 October 2019

Published in Journal of Statistical Mechanics: Theory and Experiment (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/0705.2594

zbMATH Keywords

exact resultssolvable lattice modelsstochastic particle dynamics (theory)molecular motors (theory)

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Interacting random processes; statistical mechanics type models; percolation theory (60K35) Dynamic lattice systems (kinetic Ising, etc.) and systems on graphs in time-dependent statistical mechanics (82C20) Interacting particle systems in time-dependent statistical mechanics (82C22) Exactly solvable dynamic models in time-dependent statistical mechanics (82C23)

Abstract: Molecular spiders are synthetic bio-molecular systems which have "legs" made of short single-stranded segments of DNA. Spiders move on a surface covered with single-stranded DNA segments complementary to legs. Different mappings are established between various models of spiders and simple exclusion processes. For spiders with simple gait and varying number of legs we compute the diffusion coefficient; when the hopping is biased we also compute their velocity.

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Cites work

• scientific article; zbMATH DE number 52458 (Why is no real title available?)
• scientific article; zbMATH DE number 1350307 (Why is no real title available?)
• scientific article; zbMATH DE number 2061732 (Why is no real title available?)
• A Gallavotti-Cohen-type symmetry in the large deviation functional for stochastic dynamics
• A combinatorial approach to jumping particles
• An exact solution of a one-dimensional asymmetric exclusion model with open boundaries
• Dynamical ensembles in stationary states.
• Exact diffusion constant for the one-dimensional partially asymmetric exclusion model
• Exact diffusion constant of a one-dimensional asymmetric exclusion model with open boundaries.
• Exact solution of a 1D asymmetric exclusion model using a matrix formulation
• Local inhomogeneity in asymmetric simple exclusion processes with extended objects
• Probability of second law violations in shearing steady states
• The Dynamics of Legged Locomotion: Models, Analyses, and Challenges

Cited in

(9)

• Dynamics of repulsion processes
• scientific article; zbMATH DE number 894693 (Why is no real title available?)
• Shepherd model for knot-limited polymer ejection from a capsid
• Anomalous transport in disordered exclusion processes with coupled particles
• Quantum centipedes with strong global constraint
• Stochastic analysis of the motion of DNA nanomechanical bipeds
• Diffusivity of a walk on fractures of a hypertorus
• Bulk diffusion in a kinetically constrained lattice gas
• scientific article; zbMATH DE number 7731853 (Why is no real title available?)

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