A Sub-quadratic Time and Space Complexity Solution for the Dated Tree Reconciliation Problem for Select Tree Topologies

DOI10.1007/978-3-662-48221-6_7MaRDI QIDQ5283825zbMATH OpenOpenAlexFDO

Authors Benjamin Drinkwater, M. A. Charleston

Publication date 25 July 2017

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-662-48221-6_7

zbMATH Keywords

phylogenycoevolutionNP-hardnesstree reconciliationtree shape

Mathematics Subject Classification ID

Problems related to evolution (92D15) Analysis of algorithms and problem complexity (68Q25) Computational difficulty of problems (lower bounds, completeness, difficulty of approximation, etc.) (68Q17) Computational methods for problems pertaining to biology (92-08)

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Cites work

• Properties of phylogenetic trees generated by Yule-type speciation models
• Stochastic models and descriptive statistics for phylogenetic trees, from Yule to today.
• The probabilities of rooted tree-shapes generated by random bifurcation

Cited in

(2)

• Co-divergence and tree topology
• Deep coalescence reconciliation with unrooted gene trees: linear time algorithms

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