Flexible single molecule simulation of reaction-diffusion processes

DOI10.1016/J.JCP.2011.02.020zbMath1225.82041OpenAlexW2008057778MaRDI QIDQ544570

Stefan Hellander, Per Loetstedt

Publication date: 15 June 2011

Published in: Journal of Computational Physics (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1016/j.jcp.2011.02.020

zbMATH Keywords

operator splittingreaction-diffusionchemical-master equation

Mathematics Subject Classification ID

Interacting particle systems in time-dependent statistical mechanics (82C22) Reaction-diffusion equations (35K57)

Related Items (5)

Multiscale Simulation of Stochastic Reaction-Diffusion Networks ⋮ A first-passage kinetic Monte Carlo method for reaction-drift-diffusion processes ⋮ Efficient Green's function reaction dynamics (GFRD) simulations for diffusion-limited, reversible reactions ⋮ Stochastic reaction-diffusion processes with embedded lower-dimensional structures ⋮ Galerkin finite element method for time-fractional stochastic diffusion equations

Uses Software

• MesoRD
• Smoldyn
• Cell++

Cites Work

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• A first-passage kinetic Monte Carlo algorithm for complex diffusion-reaction systems
• Stochastic simulation of coupled reaction-diffusion processes
• What Makes Molecular Dynamics Work?
• Simulation of Stochastic Reaction-Diffusion Processes on Unstructured Meshes
• Computation of the Complex Error Function
• Finite Volume Methods for Hyperbolic Problems
• Stochastic reaction-diffusion kinetics in the microscopic limit
• On the Construction and Comparison of Difference Schemes
• Handbook of stochastic methods for physics, chemistry and natural sciences.

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