Smoldyn

swMATH23962MaRDI QIDQ35723FDOQ35723

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Cited In (22)

• Particle-based multiscale modeling of calcium puff dynamics
• Bayesian learning of effective chemical master equations in crowded intracellular conditions
• Accurate Particle-Based Reaction Algorithms for Fixed Timestep Simulators
• Multiscale modeling of diffusion in a crowded environment
• Multiscale Simulation of Stochastic Reaction-Diffusion Networks
• Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
• Multithreaded stochastic PDES for reactions and diffusions in neurons
• Diffusion-controlled reactions modeling in Geant4-DNA
• Sequestration of CaMKII in dendritic spines in silico
• Spatiotemporal maps of CaMKII in dendritic spines
• Reactive boundary conditions as limits of interaction potentials for Brownian and Langevin dynamics
• Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations
• Stochastic reaction-diffusion processes with embedded lower-dimensional structures
• Smoluchowski Reaction Kinetics for Reactions of Any Order
• Executable biochemical space for specification and analysis of biochemical systems
• Simulation of stochastic diffusion via first exit times
• Comparative study of metaheuristics for the curve-fitting problem: modeling neurotransmitter diffusion and synaptic receptor activation
• Flexible single molecule simulation of reaction-diffusion processes
• Analysis and design of jump coefficients in discrete stochastic diffusion models
• Coupling particle-based reaction-diffusion simulations with reservoirs mediated by reaction-diffusion PDEs
• Spatial stochastic intracellular kinetics: a review of modelling approaches
• Coarse-graining molecular dynamics: stochastic models with non-Gaussian force distributions

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