Smoldyn
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Software:35723
swMATH23962MaRDI QIDQ35723FDOQ35723
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Cited In (22)
- Multithreaded Stochastic PDES for Reactions and Diffusions in Neurons
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- Bayesian learning of effective chemical master equations in crowded intracellular conditions
- Analysis and Design of Jump Coefficients in Discrete Stochastic Diffusion Models
- Accurate Particle-Based Reaction Algorithms for Fixed Timestep Simulators
- Multiscale modeling of diffusion in a crowded environment
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
- Diffusion-controlled reactions modeling in Geant4-DNA
- Reactive boundary conditions as limits of interaction potentials for Brownian and Langevin dynamics
- Coupling Particle-Based Reaction-Diffusion Simulations with Reservoirs Mediated by Reaction-Diffusion PDEs
- Multiscale stochastic reaction-diffusion algorithms combining Markov chain models with stochastic partial differential equations
- Stochastic reaction-diffusion processes with embedded lower-dimensional structures
- Smoluchowski Reaction Kinetics for Reactions of Any Order
- Executable biochemical space for specification and analysis of biochemical systems
- Simulation of stochastic diffusion via first exit times
- Comparative study of metaheuristics for the curve-fitting problem: modeling neurotransmitter diffusion and synaptic receptor activation
- Particle-Based Multiscale Modeling of Calcium Puff Dynamics
- Flexible single molecule simulation of reaction-diffusion processes
- Spatial stochastic intracellular kinetics: a review of modelling approaches
- Coarse-graining molecular dynamics: stochastic models with non-Gaussian force distributions
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