swMATH10400MaRDI QIDQ22361FDOQ22361
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Official website: http://sourceforge.net/projects/urdme/
Cited In (41)
- Local error estimates for adaptive simulation of the reaction-diffusion master equation via operator splitting
- The role of dimerisation and nuclear transport in the Hes1 gene regulatory network
- The linear noise approximation for spatially dependent biochemical networks
- Mesoscopic modeling of stochastic reaction-diffusion kinetics in the subdiffusive regime
- Spatial-stochastic modelling of synthetic gene regulatory networks
- Multiscale modeling of diffusion in a crowded environment
- Multiscale Simulation of Stochastic Reaction-Diffusion Networks
- Convergence of methods for coupling of microscopic and mesoscopic reaction-diffusion simulations
- Chemical diffusion master equation: Formulations of reaction–diffusion processes on the molecular level
- Stability and Strong Convergence for Spatial Stochastic Kinetics
- Computational modelling of cancer development and growth: modelling at multiple scales and multiscale modelling
- A comparison of bimolecular reaction models for stochastic reaction-diffusion systems
- Editorial: Special issue on stochastic modelling of reaction-diffusion processes in biology
- Stochastic reaction-diffusion processes with embedded lower-dimensional structures
- Chemotaxis
- Wavos
- PySB
- STEPS
- SimInf
- EpiModel
- MOLNs
- PyURDME
- ReaDDy
- Stochastic diffusion processes on Cartesian meshes
- Simulation of stochastic diffusion via first exit times
- Robustness analysis of spatiotemporal models in the presence of extrinsic fluctuations
- MesoRD
- amei
- mlrnd
- ROSS
- Hy3S
- Smoldyn
- StochSS
- Invasiveness of a growth-migration system in a two-dimensional percolation cluster: a stochastic mathematical approach
- A probabilistic framework for particle-based reaction-diffusion dynamics using classical Fock space representations
- A discrete stochastic formulation for reversible bimolecular reactions via diffusion encounter
- Pathwise error bounds in multiscale variable splitting methods for spatial stochastic kinetics
- An unstructured mesh convergent reaction-diffusion master equation for reversible reactions
- Stochastic simulation of pattern formation in growing tissue: a multilevel approach
- Spatial stochastic intracellular kinetics: a review of modelling approaches
- Simulation of stochastic reaction-diffusion processes on unstructured meshes
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