Extracting conserved gene expression motifs from gene expression data

zbMATH Open1219.92024MaRDI QIDQ5456731FDOQ5456731

Authors: T. M. Murali, Simon Kasif 

Publication date: 14 April 2008

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Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Genetics and epigenetics (92D10) Computational methods for problems pertaining to biology (92-08)

Cited In (15)

• A probabilistic relaxation labeling framework for reducing the noise effect in geometric biclustering of gene expression data
• A graph spectrum based geometric biclustering algorithm
• Finding biclusters by random projections
• A finite mixture approach to joint clustering of individuals and multivariate discrete outcomes
• Topological biclustering ARTMAP for identifying within bicluster relationships
• Biclustering via structured regularized matrix decomposition
• A biclustering algorithm for binary matrices based on penalized Bernoulli likelihood
• Extracting best consensus motifs from positive and negative examples
• Mining order-preserving submatrices from probabilistic matrices
• A new geometric biclustering algorithm based on the Hough transform for analysis of large-scale microarray data
• Clustering microarray data using model-based double \(K\)-means
• New heuristics for the bicluster editing problem
• The ParTriCluster algorithm for gene expression analysis
• MOPAC: motif finding by preprocessing and agglomerative clustering from microarrays
• Heuristic search of exact biclusters in binary data

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