Whole genome human/mouse phylogenetic footprinting of potential transcription regulatory signals

MaRDI QIDQ5456773zbMATH OpenFDO

Authors E. Cheremushkin, A. Kel

Publication date 14 April 2008

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Problems related to evolution (92D15) Computational methods for problems pertaining to biology (92-08)

Recommendations

• Evaluation of phylogenetic footprinting and its application for improved prediction of transcription factor binding sites
• Phylogenetic footprinting and consistent sets of local aligments
• Distance conservation of transcription regulatory motifs in human promoters
• Identifying potential regulatory elements by transcription factor binding site alignment using partial order graphs
• Evolution of conserved non-coding sequences.

Cited in

(7)

• Phylogenetic footprinting and consistent sets of local aligments
• The p53MH algorithm and its application in detecting p53-responsive genes
• Distance conservation of transcription regulatory motifs in human promoters
• Evolution of conserved non-coding sequences.
• Mammalian Genomes Ease Location of Human DNA Functional Segments but Not Their Description
• Evaluation of phylogenetic footprinting and its application for improved prediction of transcription factor binding sites
• Regulatory Signals in Genomic Sequences

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