A data-analytic strategy for protein biomarker discovery: profiling of high-dimensional proteomic data for cancer detection

DOI10.1093/BIOSTATISTICS/4.3.449MaRDI QIDQ5701244zbMATH OpenOpenAlexWikidataFDO

Authors Yutaka Yasui, M. Pepe, Mary L. Thompson, Bao-Ling Adam, George Wright, Yinsheng Qu, John D. Potter, Marcy Winget, Mark Thornquist, Ziding Feng

Publication date 2 November 2005

Published in Biostatistics (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1093/biostatistics/4.3.449

zbMATH Keywords

BioinformaticsClassificationDisease markersMachine LearningMass spectrometry

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Artificial intelligence (68T99) Biochemistry, molecular biology (92C40) Medical applications (general) (92C50)

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• A new genetic algorithm in proteomics: feature selection for SELDI-TOF data
• Computational methods for recognition of cancer protein markers in saliva
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• Prototype based fuzzy classification in clinical proteomics
• Detecting and aligning peaks in mass spectrometry data with applications to MALDI
• A high performance biomarker detection method for exhaled breath mass spectrometry data
• Developing a discrimination rule between breast cancer patients and controls using proteomics mass spectrometric data: a three-step approach
• A classification model for the Leiden proteomics competition
• A new method for recognition proteomic mass spectrometry data using double-time projections
• Boosting with missing predictors
• Partially Supervised Learning Using an EM‐Boosting Algorithm
• Bayesian Analysis of Mass Spectrometry Proteomic Data Using Wavelet-Based Functional Mixed Models
• Multiple testing of local maxima for detection of peaks in 1D
• Analysis of proteomics data: an improved peak alignment approach
• A resample-replace lasso procedure for combining high-dimensional markers with limit of detection
• A mass spectrometric analysis method based on PPCA and SVM for early detection of ovarian cancer
• Binary Markov random fields and interpretable mass spectra discrimination
• Issues of Processing and Multiple Testing of SELDI-TOF MS Proteomic Data
• Formal Concept Analysis for the Identification of Combinatorial Biomarkers in Breast Cancer
• Detection of cancer-specific markers amid massive mass spectral data
• Multiscale Processing of Mass Spectrometry Data
• Functional and parametric estimation in a semi- and nonparametric model with application to mass-spectrometry data
• Shrinkage estimation applied to a semi-nonparametric regression model
• Link test -- a statistical method for finding prostate cancer biomarkers

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