Research in Computational Molecular Biology

DOI10.1007/B135594MaRDI QIDQ5706911zbMATH OpenOpenAlexFDO

Authors Anne Bergeron, Julia Mixtacki, Jens Stoye

Publication date 23 November 2005

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/b135594

Mathematics Subject Classification ID

Biochemistry, molecular biology (92C40) Computational methods for problems pertaining to biology (92-08)

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• Working on the problem of sorting by transpositions on genome rearrangements
• Efficient algorithms for multichromosomal genome rearrangements.
• Polynomial-Time Algorithm for Sorting by Generalized Translocations
• Rearrangements in phylogenetic inference: compare, model, or encode?
• Combinatorial Pattern Matching
• A retrospective on genomic preprocessing for comparative genomics
• The fibers and range of reduction graphs in ciliates
• Strategies of loop recombination in ciliates
• Reducibility of gene patterns in ciliates using the breakpoint graph.
• A New and Faster Method of Sorting by Transpositions
• Exemplar or matching: modeling DCJ problems with unequal content genome data
• On Sorting by 3-Bounded Transpositions
• An \(O(n^{3/2}\sqrt {\log (n)})\) algorithm for sorting by reciprocal translocations
• scientific article; zbMATH DE number 910919 (Why is no real title available?)
• Genome rearrangements: a correct algorithm for optimal capping
• Sorting genomes by generalized translocations
• An $O(n^{3/2}\sqrt{\log (n)})$ Algorithm for Sorting by Reciprocal Translocations
• A 1.75-approximation algorithm for unsigned translocation distance

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