A Bayesian Hidden Markov Model for Motif Discovery Through Joint Modeling of Genomic Sequence and ChIP‐Chip Data

DOI10.1111/j.1541-0420.2008.01180.xzbMath1180.62169WikidataQ33408346 ScholiaQ33408346MaRDI QIDQ5850957

Joseph G. Ibrahim, Jonathan A. Gelfond, Mayetri Gupta

Publication date: 21 January 2010

Published in: Biometrics (Search for Journal in Brave)

Full work available at URL: http://europepmc.org/articles/pmc2794970

zbMATH Keywords

data augmentation; gene regulation; tiling array; transcription factor binding site

Mathematics Subject Classification ID

62P10: Applications of statistics to biology and medical sciences; meta analysis

62F15: Bayesian inference

92C50: Medical applications (general)

92C40: Biochemistry, molecular biology

65C40: Numerical analysis or methods applied to Markov chains

Related Items

Bayesian hidden Markov models to identify RNA–protein interaction sites in PAR‐CLIP

Uses Software

• TileMap

Cites Work

• Bayesian Models for Multiple Local Sequence Alignment and Gibbs Sampling Strategies
• A Flexible and Powerful Bayesian Hierarchical Model for ChIP-Chip Experiments
• Integrating quantitative information from ChIP-chip experiments into motif finding
• Discovery of Conserved Sequence Patterns Using a Stochastic Dictionary Model
• Mixture Modeling for Genome‐Wide Localization of Transcription Factors
• ChIP‐chip: Data, Model, and Analysis