Discovery of Conserved Sequence Patterns Using a Stochastic Dictionary Model

DOI10.1198/016214503388619094zbMath1047.62107OpenAlexW1969698218MaRDI QIDQ4468523

Mayetri Gupta, Jun S. Liu

Publication date: 10 June 2004

Published in: Journal of the American Statistical Association (Search for Journal in Brave)

Full work available at URL: https://doi.org/10.1198/016214503388619094

zbMATH Keywords

missing datadata augmentationgene regulationtranscription factor binding site

Mathematics Subject Classification ID

Applications of statistics to biology and medical sciences; meta analysis (62P10) Bayesian inference (62F15) Applications of mathematical programming (90C90) Biochemistry, molecular biology (92C40) Protein sequences, DNA sequences (92D20)

Related Items (9)

Sampling motifs on phylogenetic trees ⋮ A transdimensional Bayesian model for pattern recognition in DNA sequences ⋮ Computational discovery of gene regulatory binding motifs: a Bayesian perspective ⋮ Generalized Hierarchical Markov Models for the Discovery of Length‐Constrained Sequence Features from Genome Tiling Arrays ⋮ Context dependent models for discovery of transcription factor binding sites ⋮ Self-organizing neural networks to support the discovery of DNA-binding motifs ⋮ Heterogeneity in DNA Multiple Alignments: Modeling, Inference, and Applications in Motif Finding ⋮ A Bayesian Hidden Markov Model for Motif Discovery Through Joint Modeling of Genomic Sequence and ChIP‐Chip Data ⋮ Computational Biology: Toward Deciphering Gene Regulatory Information in Mammalian Genomes

Uses Software

• tsbridge

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