The shape of a seed bank tree

DOI10.1017/JPR.2021.79MaRDI QIDQ5868519zbMATH OpenOpenAlexWikidataFDO

Authors Adrián González Casanova, Lizbeth Peñaloza, Arno Siri-Jégousse

Publication date 21 September 2022

Published in Journal of Applied Probability (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/2001.04500

zbMATH Keywords

branch lengthssampling formulaseed bankstructured coalescent

Mathematics Subject Classification ID

Combinatorial probability (60C05) Stopping times; optimal stopping problems; gambling theory (60G40) Applications of continuous-time Markov processes on discrete state spaces (60J28) Applications of coalescent processes (60J95) Population dynamics (general) (92D25)

Abstract: We derive the asymptotic behavior of the total, active and inactive branch lengths of the seed bank coalescent, when the size of the initial sample grows to infinity. Those random variables have important applications for populations evolving under some seed bank effects, such as plants and bacteria, and for some cases of structured populations like metapopulations. The proof relies on the study of the tree at a stopping time corresponding to the first time that a deactivated lineage reactivates. We also give conditional sampling formulas for the random partition and we study the system at the time of the first deactivation of a lineage. All these results provide a good picture of the different regimes and behaviors of the block-counting process of the seed bank coalescent.

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Cites work

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Cited in

(9)

• The seed bank coalescent with simultaneous switching
• Recursions for the exchangeable partition function of the seedbank coalescent
• Strong seed-bank effects in bacterial evolution
• Coalescent theory for seed bank models
• scientific article; zbMATH DE number 1088282 (Why is no real title available?)
• Seed bank Cannings graphs: how dormancy smoothes random genetic drift
• Lookdown construction for a Moran seed-bank model
• Dormancy in stochastic population models
• The TMRCA of general genealogies in populations with deterministically varying size

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