Persistent extensions and analogous bars: data-induced relations between persistence barcodes

DOI10.1007/S41468-023-00115-YarXiv2201.05190MaRDI QIDQ6074057FDOQ6074057

Authors: Hee Rhang Yoon, Robert Ghrist, Chad Giusti 

Publication date: 18 September 2023

Published in: Journal of Applied and Computational Topology (Search for Journal in Brave)

Abstract: A central challenge in topological data analysis is the interpretation of barcodes. The classical algebraic-topological approach to interpreting homology classes is to build maps to spaces whose homology carries semantics we understand and then to appeal to functoriality. However, we often lack such maps in real data; instead, we must rely on a cross-dissimilarity measure between our observations of a system and a reference. In this paper, we develop a pair of computational homological algebra approaches for relating persistent homology classes and barcodes: persistent extension, which enumerates potential relations between cycles from two complexes built on the same vertex set, and the method of analogous bars, which utilizes persistent extension and the witness complex built from a cross-dissimilarity measure to provide relations across systems. We provide an implementation of these methods and demonstrate their use in comparing cycles between two samples from the same metric space and determining whether topology is maintained or destroyed under clustering and dimensionality reduction.

Full work available at URL: https://arxiv.org/abs/2201.05190

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zbMATH Keywords

witness complexpersistence moduleshomology class relationspersistent homological algebra

Mathematics Subject Classification ID

Computational aspects of data analysis and big data (68T09) Persistent homology and applications, topological data analysis (55N31)

Cites Work

• Topology and data
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• Computing persistent homology
• Topological persistence and simplification
• Zigzag persistence
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• Stability of persistence diagrams
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• Construction of universal bundles. I
• Induced Matchings of Barcodes and the Algebraic Stability of Persistence
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• Persistence Diagrams as Diagrams: A Categorification of the Stability Theorem
• The persistent homology of a sampled map: from a viewpoint of quiver representations
• Sparse Circular Coordinates via Principal $$\mathbb {Z}$$-Bundles
• The space of barcode bases for persistence modules
• Partial matchings induced by morphisms between persistence modules

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