Persistent extensions and analogous bars: data-induced relations between persistence barcodes

DOI10.1007/S41468-023-00115-YMaRDI QIDQ6074057FDOQ6074057

Authors Hee Rhang Yoon, Robert Ghrist, Chad Giusti 

Publication date 18 September 2023

Published in Journal of Applied and Computational Topology (Search for Journal in Brave)

Full work available at URL https://arxiv.org/abs/2201.05190

zbMATH Keywords

witness complexpersistence moduleshomology class relationspersistent homological algebra

Mathematics Subject Classification ID

Computational aspects of data analysis and big data (68T09) Persistent homology and applications, topological data analysis (55N31)

Abstract: A central challenge in topological data analysis is the interpretation of barcodes. The classical algebraic-topological approach to interpreting homology classes is to build maps to spaces whose homology carries semantics we understand and then to appeal to functoriality. However, we often lack such maps in real data; instead, we must rely on a cross-dissimilarity measure between our observations of a system and a reference. In this paper, we develop a pair of computational homological algebra approaches for relating persistent homology classes and barcodes: persistent extension, which enumerates potential relations between cycles from two complexes built on the same vertex set, and the method of analogous bars, which utilizes persistent extension and the witness complex built from a cross-dissimilarity measure to provide relations across systems. We provide an implementation of these methods and demonstrate their use in comparing cycles between two samples from the same metric space and determining whether topology is maintained or destroyed under clustering and dimensionality reduction.

Recommendations

• Barcodes: The persistent topology of data
• Learning representations of persistence barcodes
• A framework for differential calculus on persistence barcodes
• PERSISTENCE BARCODES FOR SHAPES
• Induced matchings of barcodes and the algebraic stability of persistence
• The space of barcode bases for persistence modules
• Induced matchings and the algebraic stability of persistence barcodes
• An entropy-based persistence barcode
• The ring of algebraic functions on persistence bar codes
• Barcodes of towers and a streaming algorithm for persistent homology

Cites Work

• A functorial Dowker theorem and persistent homology of asymmetric networks
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• Topological persistence and simplification
• Topological spaces of persistence modules and their properties
• Topology and data
• Zigzag persistence

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