Using a graph transformer network to predict 3D coordinates of proteins via geometric algebra modelling

DOI10.1007/978-3-031-30923-6_7MaRDI QIDQ6134244zbMATHOpenAlexFDO

Authors Alberto Pepe, Joan Lasenby, Pablo Chacón

Publication date 21 August 2023

Published in Lecture Notes in Computer Science (Search for Journal in Brave)

Full work available at URL https://doi.org/10.1007/978-3-031-30923-6_7

zbMATH Keywords

protein structure predictiongeometric algebra3D modellinggraph transformer

Mathematics Subject Classification ID

Artificial neural networks and deep learning (68T07) Computer graphics; computational geometry (digital and algorithmic aspects) (68U05) Computer-aided design (modeling of curves and surfaces) (65D17) Applications of Clifford algebras to physics, etc. (15A67)

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Cites work

• scientific article; zbMATH DE number 2010195 (Why is no real title available?)
• Calculating the rotor between conformal objects
• Geometric algebra to model uncertainties in the discretizable molecular distance geometry problem
• Oriented conformal geometric algebra and the molecular distance geometry problem

Cited in

(4)

• Iterative SE(3)-transformers
• Geometric algebra models of proteins for three-dimensional structure prediction
• Geometric algebra models of proteins for three-dimensional structure prediction: a detailed analysis
• Geometric product of two oriented points in conformal geometric algebra

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