Poisson point process models solve the ``pseudo-absence problem for presence-only data in ecology
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Poisson point process models solve the ``pseudo-absence problem'' for presence-only data in ecology
Poisson point process models solve the ``pseudo-absence problem'' for presence-only data in ecology
Abstract: Presence-only data, point locations where a species has been recorded as being present, are often used in modeling the distribution of a species as a function of a set of explanatory variables---whether to map species occurrence, to understand its association with the environment, or to predict its response to environmental change. Currently, ecologists most commonly analyze presence-only data by adding randomly chosen "pseudo-absences" to the data such that it can be analyzed using logistic regression, an approach which has weaknesses in model specification, in interpretation, and in implementation. To address these issues, we propose Poisson point process modeling of the intensity of presences. We also derive a link between the proposed approach and logistic regression---specifically, we show that as the number of pseudo-absences increases (in a regular or uniform random arrangement), logistic regression slope parameters and their standard errors converge to those of the corresponding Poisson point process model. We discuss the practical implications of these results. In particular, point process modeling offers a framework for choice of the number and location of pseudo-absences, both of which are currently chosen by ad hoc and sometimes ineffective methods in ecology, a point which we illustrate by example.
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- The aspect Bernoulli model: multiple causes of presences and absences
- A choice model with a diverging choice set for POI data analysis
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- Statistical learning for species distribution models in ecological studies
- Finite-sample equivalence in statistical models for presence-only data
- Animal movement models for multiple individuals
- Predicting the geographic distribution of a species from presence-only data subject to detection errors
- Penalized composite likelihoods for inhomogeneous Gibbs point process models
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- Computationally efficient statistical differential equation modeling using homogenization
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- Analysis of presence-only data via exact Bayes, with model and effects identification
- Efficient modelling of presence-only species data via local background sampling
- Estimating animal utilization distributions from multiple data types: a joint spatiotemporal point process framework
- A general theory for preferential sampling in environmental networks
- Leverage and influence diagnostics for spatial point processes
- Multi-species distribution modeling using penalized mixture of regressions
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